1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttctcaccttcccacttccctggcctcactgaatgtagtatcttgctggttttcattccgtggggcggcggatctgttctgttcttagcgcggttcacatgtttttgtcagccaatctgacgagcccccacttgggtttggatccgttgttgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTACTTTGCGTCGGAGGTCCACTCCGGCAATCTGAAGAATTTCGGTCTCATC
species | Zea mays |
transcript | GRMZM2G086934_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|211530807|gb|FL076080.1|FL076080
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|50331879|gb|CO527005.1|CO527005
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|211527807|gb|FL076066.1|FL076066
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|78024319|gb|DV492706.1|DV492706
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|26557736|gb|CA829971.1|CA829971
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|148976840|gb|EE025967.2|EE025967
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|78081808|gb|DV510220.1|DV510220
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|78024998|gb|DV493385.1|DV493385
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|211530804|gb|FL076077.1|FL076077
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTAEST: gi|149086433|gb|EE175976.2|EE175976
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
EST: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAG TTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
genomic: GTCGTTCAGGTCCTCGATCTCAAGTCCATCGGCATGGGCAGCCGGTTCAGgtgagttctc ... tgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTA
tgtcagccaatctgacgagcccccacttgggtttggatccgttgttgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTACTTTGCGTCGGAGGTCCACTCCGGCAATCTGAAGAATTTCGGTCTCATC
atctgac putative branch site (score: 75)
ttgcctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctcaccttcccacttccctggcctcactgaatgtagtatcttgctggttttcattccgtggggcggcggatctgttctgttcttagcgcggttcacatgtttttgtcagccaatctgacgagcccccacttgggtttggatccgttgttgccttgcagTTTCACGGCAACCGATGGGAACGACAAAATCAAGGCGATGCTCCCCACTTACTTTGCGTCGGAGGTCCACTCCGGCAATCTGAAGAATTTCGGTCTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA