Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttcttctgatcactcaaatgtcactttttacttatacactaagtttcacatggttgtatcattggatttacaatcttattgttctttttgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG

Basic information

species Zea mays
transcript GRMZM2G086904_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086904_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g38960.1 (Oryza sativa), 3'ss of exon 1
-ggttcttctgatcactcaaatgtcactttttacttatacact--aagtttcacatggttgtatcattggatttacaatcttattgttctttttgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
       | ||||  || ||       || |||  | |    |  |||  |    | |||| || ||||  |||  |||   |||||  |||    | | |||||||||||||||||| |||||||| |||||||||
acaactatatgattgctgaagcactgattgttatatgtcattttaaaggattgttttgttggat-attgattttggaatggcattgtattttcc--tctgcagGTATGAGGATGAGCCACCAGAACCTGAGATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211479823|gb|FL079091.1|FL079091
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211497131|gb|FL079176.1|FL079176
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|89756827|gb|DY686702.1|DY686702
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211132169|gb|FL066406.1|FL066406
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211202195|gb|FL066453.1|FL066453
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211500014|gb|FL079188.1|FL079188
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211132172|gb|FL066409.1|FL066409
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211497141|gb|FL079186.1|FL079186
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491362|gb|FL079150.1|FL079150
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60394107|gb|DN226977.1|DN226977
EST:     ACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: ACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211488472|gb|FL079130.1|FL079130
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211497133|gb|FL079178.1|FL079178
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|67033929|gb|CO462678.1|CO462678
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|67023915|gb|CO452664.1|CO452664
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|213191189|gb|FM195899.1|FM195899
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211356285|gb|FL079082.1|FL079082
EST:     TGC-SSAGCGGAGCCATGGC-GACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211199643|gb|FL066449.1|FL066449
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482713|gb|FL079106.1|FL079106
EST:     TGC-SGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|148949027|gb|EC894449.2|EC894449
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482719|gb|FL079112.1|FL079112
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482707|gb|FL079100.1|FL079100
EST:     TGC-SGAGCGGAGCCATGGC-GACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60355890|gb|DN222863.1|DN222863
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|18176963|gb|BM378173.1|BM378173
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485599|gb|FL079126.1|FL079126
EST:     TGC-SGAGCGGAGCCATGGC-GACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211494246|gb|FL079165.1|FL079165
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60352015|gb|DN218988.1|DN218988
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211204767|gb|FL066468.1|FL066468
EST:     TGC-NGAGCGGAGCCATGGC-GACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485591|gb|FL079118.1|FL079118
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482708|gb|FL079101.1|FL079101
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211500015|gb|FL079189.1|FL079189
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211199632|gb|FL066438.1|FL066438
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482718|gb|FL079111.1|FL079111
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491367|gb|FL079155.1|FL079155
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|30087311|gb|CB885519.1|CB885519
EST:     GCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAG-ACCGGGAGATTGAG
genomic: GCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACC-GGAGATTGAG
EST: gi|33468145|gb|CF245194.1|CF245194
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|71317790|gb|DR795656.1|DR795656
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211479822|gb|FL079090.1|FL079090
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211199642|gb|FL066448.1|FL066448
EST:     ACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: ACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211132178|gb|FL066415.1|FL066415
EST:     GCGCGAGCGGAGCCATGGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: GCGCGGGCGGAGCCAT-GGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485597|gb|FL079124.1|FL079124
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|71317789|gb|DR795655.1|DR795655
EST:     AAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: AAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|13490631|gb|BG517395.1|BG517395
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|67030385|gb|CO459134.1|CO459134
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|37379391|gb|CF626441.1|CF626441
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|9824896|gb|BE574993.1|BE574993
EST:     GCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: GCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211133111|gb|FL066433.1|FL066433
EST:     TGCSCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60355684|gb|DN222657.1|DN222657
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211202205|gb|FL066463.1|FL066463
EST:     ACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: ACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491361|gb|FL079149.1|FL079149
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211133107|gb|FL066429.1|FL066429
EST:     T--GCBAGCGGAGCCATGGCGNACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211133106|gb|FL066428.1|FL066428
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211008098|gb|FL135922.1|FL135922
EST:     ACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: ACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60349499|gb|DN216472.1|DN216472
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211497142|gb|FL079187.1|FL079187
EST:     TGSGCGAGCGGAGCCATGGCGGACGACGACWACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491366|gb|FL079154.1|FL079154
EST:     TGCGCGAGCGGAGCCATGGCGNACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211479829|gb|FL079097.1|FL079097
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211494250|gb|FL079169.1|FL079169
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|13389425|gb|BG462716.1|BG462716
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|16918257|gb|BM073664.1|BM073664
EST:     ACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: ACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211479820|gb|FL079088.1|FL079088
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|26457622|gb|CA829205.1|CA829205
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211204768|gb|FL066469.1|FL066469
EST:     TGC-BGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTKACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211494252|gb|FL079171.1|FL079171
EST:     TGCGCGAGCGGAGCCRTGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211479827|gb|FL079095.1|FL079095
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485595|gb|FL079122.1|FL079122
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|32912111|gb|CF016923.1|CF016923
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGATCCGTAGTTTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485590|gb|FL079117.1|FL079117
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211202199|gb|FL066457.1|FL066457
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|32908545|gb|CF013358.1|CF013358
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|20301294|gb|BQ164237.1|BQ164237
EST:     CGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGA-TGAG
genomic: CGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211131248|gb|FL066400.1|FL066400
EST:     TGC-BBAGCGGASCCATGGC-GACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60337282|gb|DN204255.1|DN204255
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211488483|gb|FL079141.1|FL079141
EST:     TGCSCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491358|gb|FL079146.1|FL079146
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAAGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|60343431|gb|DN210404.1|DN210404
EST:     GCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: GCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211491357|gb|FL079145.1|FL079145
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|33467778|gb|CF244827.1|CF244827
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|40485863|gb|CK394777.1|CK394777
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|30087312|gb|CB885520.1|CB885520
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482709|gb|FL079102.1|FL079102
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|32910381|gb|CF015193.1|CF015193
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211485589|gb|FL079116.1|FL079116
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|37374244|gb|CF623466.1|CF623466
EST:     TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211008103|gb|FL135927.1|FL135927
EST:     TGCGCGAGCGGAGCCATGGCGGACGACGACTACAACGAAATTGACATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: TGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
EST: gi|211482712|gb|FL079105.1|FL079105
EST:     GCGCGAGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACNATGGG                         GTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
genomic: GCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGAC-ATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 1737

CAGCAGCCCGGCGAAAACCCTAGTAAGCAAACCACCGGAGCAGCGGCGCTTGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 715

CAGCAGCCCGGCGAAAACCCTAGTAAGCAAACCACCGGAGCAGCGGCGCTTGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 612

CAGCAGCCCGGCGAAAACCCTAGTAAGCAAACCACCGGAGCAGCGGCGCTTGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 1137

CAGCAGCCCGGCGAAAACCCTAGTAAGCAAACCACCGGAGCAGCGGCGCTTGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATTGACATGGGgtcgatctct ... tgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacatggttgtatcattggatttacaatcttattgttctttttgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG
                              tcttattgttcttttt  CT-rich tract
                      atttacaatcttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttcttctgatcactcaaatgtcactttttacttatacactaagtttcacatggttgtatcattggatttacaatcttattgttctttttgttatacagGTATGAGGATGAGCCCCCAGAACCGGAGATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- -tcttctg
- - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - -acactaa
- - - - - - - - - - - - - - - - - - - - - - - - cacatgg