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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagaagccgcctttacaagttctttcccccaaactcgaatcattcgcaccaaagctccagcctttttcgcctgttcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGGCCGGCCGCGCCTGGACCGTGCTGACTTCGCGAACATGATG

Basic information

species Zea mays
transcript GRMZM2G086614_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086614_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 1
gtagagaagccgccttt-acaagttctttcccccaaactcgaatcattcgcaccaaagctccagccttt----ttcgcctgttcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGGCCGGCCGCGCCTGGACCGTGCTGACTTCGCGAACATGATG
|||  ||  |||||||| ||||  ||  |   |||| |||||| | |||     |||| |||| |||||    || |  ||  || |||||||||||||||||| ||| | |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |  ||||| || | |||||||
gtaccga--ccgccttttacaacctccatattccaagctcgaagctttc-----aaagttccaacctttgttgtttggttgcgcgtgtgcagAGCCGCGGCGGCGGCGGCGCTGATGCTCGGCGGCAGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGACTTTGCCAGCATGATG

upper sequence: GRMZM2G086614_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g21160.1 (Oryza sativa), 3'ss of exon 1
gtagagaagccgcctttacaagttctt----tcccccaaactcgaatcattcgcaccaaagctccag--cctttttcgcctgttcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGGCCGGCCGCGCCTGGACCGTGCTGACTTCGCGAACATGATG---
   |     |||||||  |||  ||      | | |||| |  |||     |    ||||| ||||   | ||| | || ||  || ||| |||||||| |||||||||   |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |  || ||||| | |||||||   
---gtactaccgccttcgcaacctccatgcgttctccaagccagaagg---catttcaaagttccaaaacgtttcttgcttgcgcgtgtgaagAGCCGCCGCGGCCGCG---CTGATGCTCGCCGGCGGCGACGAGGCGCACAAGTTCATGGGGCGGCCGCGCCTGGACCGCGTCGATTTCGCCAGCATGATGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaactcgaatcattcgcaccaaagctccagcctttttcgcctgttcgcgtgcagAGCCGCGGCGGCCGCGTCTCTGATGCTGGGCGGCGGCGACGAGGCGCACAAGTTCATGGGCCGGCCGCGCCTGGACCGTGCTGACTTCGCGAACATGATG
                               cctttttcgcctgttc  CT-rich tract
        aatcatt  TA-rich tract