1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcaggttttgagagaaagcattttgctcttaacaccttgattgcatttttgtcctttatccctccatttctaatttccgcagcaacatatctattttagGATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAACACAATATTGGCACTTGTGTCTCCTAATTCCAAACCGGAGGACTTCAACC
species | Zea mays |
transcript | GRMZM2G086285_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGCTCACCGAGAAAATTGGCCTCAATCGCGCGTCCGTCCTCAGCGTC GATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAACEST: gi|211284837|gb|FL433230.1|FL433230
genomic: TTCCGCTCACCGAGAAAATTGGCCTCAATCGCGCGTCCGTCCTCAGCGTCgtgcgttcgg ... tctattttagGATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAAC
EST: TTCCGCTCACCGAGAAAATTGGCCTCAATCGCGCGTCCGTCCTCAGCGTC GATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAAC
genomic: TTCCGCTCACCGAGAAAATTGGCCTCAATCGCGCGTCCGTCCTCAGCGTCgtgcgttcgg ... tctattttagGATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAAC
atttttgtcctttatccctccatttctaatttccgcagcaacatatctattttagGATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAACACAATATTGGCACTTGTGTCTCCTAATTCCAAACCGGAGGACTTCAACC
ttctaat putative branch site (score: 3)
tctatttt putative PPT
aacatatctatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaggttttgagagaaagcattttgctcttaacaccttgattgcatttttgtcctttatccctccatttctaatttccgcagcaacatatctattttagGATGCCAAGGAGGGAACAACAACTGGGGTTTCAGCAAAGGATTGGACAAACACAATATTGGCACTTGTGTCTCCTAATTCCAAACCGGAGGACTTCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - gagagaaa
- - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcagc