Sequence
atgc intronic sequence ATGC exonic sequencegttagtccaagagcgtcattcatttgttagcaacagcacgcatgaccagcattagaaaattttaaattggttactaatatttggtgctggcgttggtcatcacagCAAACCGGTGAAGAAGGTTGGAGCCTTCTGTTGGCTCTCTCTAGCTATATGCATAGTGGAGCTGCTTATCTGCATGAAGTTTGGGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G085491_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 11
gttagtccaagagcgtcattcatttgttagcaacagcacgcatgaccagcattagaaaatt-ttaaattggttactaatatttggtgctggcgttggtcatcacagCAAACCGGTGAAGAAGGTTGGAGCCTTCTGTTGGCTCTCTCTAGCTATATGCATAGTGGAGCTGCTTATCTGCATGAAGTTTGGGCATG
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gttatcccaatttccctgcacgcccaatagcatt-gcacatttt-------ttacaattttacttaatggcttgctaatatatattttt--tcatggtcacaccagCAAACCGGTGAAGAAGGTTGGGGCTTTTTGCTGGCTCTCTCTAGCTATATGCATTGTAGAGCTTCTTATATGTATGAAGTTTGGACATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attagaaaattttaaattggttactaatatttggtgctggcgttggtcatcacagCAAACCGGTGAAGAAGGTTGGAGCCTTCTGTTGGCTCTCTCTAGCTATATGCATAGTGGAGCTGCTTATCTGCATGAAGTTTGGGCATG
tactaat putative branch site (score: 1)
aaaattttaaattggt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtccaagagcgtcattcatttgttagcaacagcacgcatgaccagcattagaaaattttaaattggttactaatatttggtgctggcgttggtcatcacagCAAACCGGTGAAGAAGGTTGGAGCCTTCTGTTGGCTCTCTCTAGCTATATGCATAGTGGAGCTGCTTATCTGCATGAAGTTTGGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT