1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatcggtggcccctctgcctcgtttcgtttgtattgtactgcctttttcttggtctctccggaagtagtagcgtcccaatgacccgctactgcgctaggcgcctagctttccatttgcggaggagtaattaaggaactgatcgcggcttgcaccttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGGCGTCAGCGACGCGCGGCTCAAGGGGCAGCTGAGCTTCTCGTCCCGGCA
species | Zea mays |
transcript | GRMZM2G085467_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGEST: gi|71765455|gb|DR963392.1|DR963392
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGEST: gi|149085917|gb|EE175445.2|EE175445
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
EST: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACG GGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
genomic: CCAGAGCAGCTCCCCCGCCGGCTTCCTCAACCACTTGAACATGGACAACGgtaatcggtg ... cttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACG
ttccatttgcggaggagtaattaaggaactgatcgcggcttgcaccttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGGCGTCAGCGACGCGCGGCTCAAGGGGCAGCTGAGCTTCTCGTCCCGGCA
aactgat putative branch site (score: 3)
caccttctt putative PPT
agtaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcggtggcccctctgcctcgtttcgtttgtattgtactgcctttttcttggtctctccggaagtagtagcgtcccaatgacccgctactgcgctaggcgcctagctttccatttgcggaggagtaattaaggaactgatcgcggcttgcaccttcttgcagGGTACGGGAGCATGCTCCGGGTGGGCATGGGCGGCGGCGGGTTCAGGAACGGCGTCAGCGACGCGCGGCTCAAGGGGCAGCTGAGCTTCTCGTCCCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT