1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacccagcgattcctccaaactgtttttgtattccatcgaatcatctctagatctcgaacgcgaactcgtttttgctcaatttccgagtgaattttgcagGGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTTGCAATCATCTCCAAGGAGGCT
species | Zea mays |
transcript | GRMZM2G084881_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACGTCATCCTCCGCGGCGGCGTCGCGGCG GGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTTEST: gi|211319160|gb|FL268453.1|FL268453
genomic: TACGTCATCCTCGGCGGCGGCGTCGCGGCGgtgcgtgccc ... aattttgcagGGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTT
EST: CGTCCGAAAAGCACTTCAAGTACGTCATCMTCGGCGGCGGCGTC-CGGCG GGGTACGCGGCGC-GGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTT
genomic: CGTCCGAAAAGCACTTCAAGTACGTCATCCTCGGCGGCGGCGTCGCGGCGgtgcgtgccc ... aattttgcagGGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTT
ctctagatctcgaacgcgaactcgtttttgctcaatttccgagtgaattttgcagGGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTTGCAATCATCTCCAAGGAGGCT
tgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccagcgattcctccaaactgtttttgtattccatcgaatcatctctagatctcgaacgcgaactcgtttttgctcaatttccgagtgaattttgcagGGGTACGCGGCGCGGGAGTTCGCCAAGCAGGGAGTTAAGCCTGGGGAGCTTGCAATCATCTCCAAGGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - -actgttt