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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

Basic information

species Zea mays
transcript GRMZM2G084757_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
aacagcttgtacttgtctgt-aatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctga--accttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
    |||   | || | |   |||  ||  ||| || ||   |  | | || |    |             | |  | |  |  |   ||||  |||  |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
gggtgctcccatttatttaccaatttatataatcacatt---tgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagc-tgctgggtgcccgggtctgaaccttgtgttatttttg--ttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
   |||    |  | |    |      ||  | | |    ||||||  ||   |     |  |         |  |  |||  | | ||    |||  ||||||| ||||| |||||||| || || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
---agccaaaatgtattcacatgctgctgtctgattcacttttgaatgttttggccctataatccaaatattgtgcataactattttttgaccttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 2
--------aacagcttgtacttgtc-tgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
        |  |   || |   ||  | | ||| ||||||| | |||   |  |   |   | |  ||| |       |   |||        ||||  | |   |||||| | |||||| ||||| || |||||||| ||||||||  | |||||||| ||||| ||||||||||| ||||| ||||| |   |||||||  | || |
gttagtggagaaatatggaagcgttgtttgatg-attgaatcatttttaatctagtctcaaatt--ctgtta------caaatctagttgagatgttgatgtatgtcagGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACAC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatt--tttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
   |  || |  ||   | |  | | |     | || |   || |      |    | |  |           | |        |||||    | | ||||||| |||||  | || || || ||||| || || ||||| ||||||||||| || || ||||||||||| ||||| |||||||   |||| ||| |||| |
-tgattttctgtttacatttt-tccctgctggtgctctatatttagtcactgcagcgttaatattcatattaatatcgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctg---ctgggtgcccgggtctgaa--ccttgtgttatttttg--ttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
       |||       | | |   | ||    | |    |   ||   || ||  | ||   ||   | |   | |   ||  ||      ||||||    || ||||||||||| | || || || ||||| || ||||||||  ||||||||||||| || ||||| ||||| ||||| ||||| |   |||||||| ||||||
-------tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatgccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactt-tgctttgaaaattcgag--tagctgctgggtgcccgggtctga-accttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
     ||  |   | |||  |     ||    | ||| |  | |  ||    |    | | ||||   |   |     ||| ||  ||  |    | | ||||||| |||||  |||| || || ||||| || ||||||||  |||||||||||||||| ||||| ||||| ||||| |||||||   |||| ||| | ||||
----tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S7_364V6.1 (Physcomitrella patens), 3'ss of exon 2
--aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
   |        |  ||   |  || | |    ||  ||  |    |   |  |||||   |    || |  |   ||||||  | |  | | | ||  ||||| || || || || |||||||| ||  | || || || ||||||||||||||  | ||||||||||| ||||| || || ||| ||||||||||||| |
ttgatgatgaaaatatggtcgatattcgtctt-ttgtttatcaagtatggtcagagtattagtgatgtacttgttactgaacactatcctgtgtgtga-cagGGTTACGTGGTGTATCGCGTCCGCGTACGCCGCGGGGGTAGGAAGAGGCCTGTTGCCAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATCACAC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 2
aacagcttgtacttgtct--gtaatgcattgaattactttgct--ttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
  || | |   || | |   || |   ||| | |||   || |  |||   |||| |   | | ||   | |     | | | | ||||| | || ||  | |||| ||||| || || |||||||| ||| | ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||| ||| |||| ||||| || |
-tcaacatcagctcgccaaggttaaatatttacttaacatggtatttgttgattccatgcgattctaa-ttctgacatatcatcgttgtggtcttgtt--ttagGGTTATGTGGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCTAAGAACCAAGGTATTACAC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttg-tgttatt--tttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
         |   | | | ||  ||||    |    || |||   || ||| |||   | ||   ||  |   |||  || ||| ||| |||   ||||  |||| ||||| || ||||| ||||| ||  | ||||| |||||||||||||| ||| ||||||||||||| ||||| || || ||| |||||||||| || |
-gtcatgactctatctttttagggcatcatttcgaatt-cttcataatttcaagtgtttactcc-tgttctactcttgacattggtgtcattatcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 3'ss of exon 2
-aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgt-tcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
   | |   || ||||  |  ||| ||||   || ||| | ||      ||| | |   ||  |||| |  ||  ||||   ||    | | ||||| |||||| || || || ||||| || |||||| | ||||| |||||||||||||||||  | ||||||||||| || || ||||| ||| |||||||||| || |
ctgctgtcagt-cttgagtaaaatacattctcttgctt-gtttgtctccttcaatttcttgtggggtacttggagctgattatttctgtgtgtttgtatcagGGCTACGTGGTGTACCGTGTTCGTGTGCGCCGTGGAGGCAGGAAGAGGCCTGTTGCTAAGGGTATTGTGTACGGAAAGCCAAAGAACCAGGGTATTACAC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtg--ttat---ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
  ||  | |   |         |    || |||  ||       |  ||| | |  | |    | | |   | | | ||| || ||  ||||    ||  || |||| |||||||| || |||||||| ||| | ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||||||| |||| ||||| || |
--cacgtggcgttcagtatagttattgtggattgattcaga--aaggatttgtg-ggttatccgcttcgaagcttttaacattatgatttatggccttattttagGGCTATGTTGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAAGGTATTACGC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
aacagcttgtacttgtctgtaatgc----attgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtct---gaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
      || ||||| || | |         ||    | | | | ||  |    |    ||  |  | | || |  | | |   ||   |  ||    |    | ||||| ||||| || ||||| ||||||||  | ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||||||| |||||||||| || |
------ttatacttttcagcacccttgttgttagggtgcctggattctatccatatgatatgt-ttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                          |  |||| ||    | |      ||| ||   |||| | |    |     |   | ||    | |  |   ||||| || ||||| ||||| ||||||||| | || || ||| | |||||||| ||  | ||||| ||||||||||| ||||||||| |||||||||||||||
-------------------------gtaaaatttctcctttct------tcgtgtg--tgctagctctttga--tcgtttcgtgctcgaatcct-cacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                          |  |||| ||    | |      ||| ||   |||| | |    |     |   | ||    | |  |   ||||| || ||||| ||||| ||||||||| | || || ||| | |||||||| ||  | ||||| ||||||||||| ||||||||| |||||||||||||||
-------------------------gtaaaatttctcctttct------tcgtgtg--tgctagctctttga--tcgtttcgtgctcgaatcct-cacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873467|gb|CB329452.1|CB329452
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|37379558|gb|CF626523.1|CF626523
EST:     CCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: CCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211133314|gb|FK986222.1|FK986222
EST:     GCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCC
genomic: GCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAG-CAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCC
EST: gi|71417010|gb|DR803889.1|DR803889
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|15208776|gb|BI430660.1|BI430660
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71427901|gb|DR808951.1|DR808951
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211517129|gb|FK986199.1|FK986199
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9028805|gb|BE238845.1|BE238845
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|94472092|gb|EB701050.1|EB701050
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|22935646|gb|BU571921.1|BU571921
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|19351590|gb|BM896122.1|BM896122
EST:     GGCCCACCCGCCCCGAC-AGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|29130274|gb|CB380978.1|CB380978
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|14243395|gb|BG841092.2|BG841092
EST:     AGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAAAGGCCT
genomic: AGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71331125|gb|DR802391.1|DR802391
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60345201|gb|DN212174.1|DN212174
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|161587720|gb|EY960402.1|EY960402
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCA
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCA
EST: gi|14997234|gb|BI319246.1|BI319246
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71324907|gb|DR799152.1|DR799152
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|78110574|gb|DV528982.1|DV528982
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71445268|gb|DR826318.1|DR826318
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|15499328|gb|BI595841.1|BI595841
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71318763|gb|DR796136.1|DR796136
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71330215|gb|DR801859.1|DR801859
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|37423630|gb|CF649543.1|CF649543
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAAGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71319466|gb|DR796477.1|DR796477
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9794847|gb|BE553155.1|BE553155
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGTCTCTGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60350524|gb|DN217497.1|DN217497
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149082153|gb|EE171333.2|EE171333
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|15199196|gb|BI423708.1|BI423708
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211100323|gb|FL067806.1|FL067806
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|24768189|gb|CA403318.1|CA403318
EST:     CCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: CCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31356233|gb|CD440590.1|CD440590
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|93014358|gb|EB639878.1|EB639878
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211323265|gb|FL262054.1|FL262054
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|22491049|gb|BU050972.1|BU050972
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|22543255|gb|BU093693.1|BU093693
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71306168|gb|DR789227.1|DR789227
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71445269|gb|DR826319.1|DR826319
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|28873328|gb|CB329331.1|CB329331
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9732161|gb|BE510913.1|BE510913
EST:     GGCCCACCCGCCCCGACAAGGCCCGTCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|31360949|gb|CD445306.1|CD445306
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|113702402|gb|EE679906.1|EE679906
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|211133304|gb|FK986212.1|FK986212
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|148999436|gb|EE036388.2|EE036388
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|60344550|gb|DN211523.1|DN211523
EST:     TTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: TTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|9952705|gb|BE639168.1|BE639168
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|213192348|gb|FM188700.1|FM188700
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|149021964|gb|EE045839.2|EE045839
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71322048|gb|DR797711.1|DR797711
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71330222|gb|DR801860.1|DR801860
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71331124|gb|DR802390.1|DR802390
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|19437161|gb|BM953571.1|BM953571
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|71318762|gb|DR796135.1|DR796135
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|28987123|gb|CB351475.1|CB351475
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|110934267|gb|EE154493.1|EE154493
EST:     GCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
EST: gi|19437051|gb|BM953461.1|BM953461
EST:     GGCTTCAAGGCCAAGCAG                         GGGTATGTTGTTTNCCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT
genomic: GGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 54

CGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 27

CGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 23 (upstream exon), 49 (downstream exon)
Score: 5

CGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 37 (upstream exon), 49 (downstream exon)
Score: 8

CGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC
                                            tttttgttc  CT-rich tract
                                         ttatttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacagcttgtacttgtctgtaatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctgaaccttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

- - - - gtacttg
- - - - - - - - - - -atgcatt
- - - - - - - - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt