Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttggccctaccgctgatgccctctccgattcgcatgtgtggggctttacggtatgttgcaccgtttctcgctgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC

Basic information

species Zea mays
transcript GRMZM2G084757_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G084757_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 1
gtgagttcttggccctaccgctgatgc-cctctccgattcgcatgtgtggggctttacggta-tgttgcacc-gtttctcgctgt--ggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC
||||| || |   ||| |  |   ||  ||||  |||    |   |      ||   |  |  || ||| || | || | ||||   || |||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||| ||||||| || ||||||||||| ||||||||| | |||||||||||
gtgagctcctcctcctcctccgcctgttcctcgtcgacctccccctacatctctcctctcttctgatgcgcccggtttttgctgcgaggtgcagGGGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACCGCCAGCAGCCGGC

upper sequence: GRMZM2G084757_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 1
---------------gtgagttcttggccctaccgctgatgccctc----tccgattcg--catgtgtggggctttacggtatgttgcaccgtt-tctcgctgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC
               |      | |  | | | | ||   | |  |    ||| |  |   ||  |      || | | |     | | ||||  | | |||||| | |||| |||||||||||||| |||||| ||||||| |||||||| || ||||||||| ||||||| || |||||||| || |||||||||||||||||||||||
gtgagctcctcctccgacgccgcctccctccatcactctcgtctccagtttcccacccctccacctccatctctctcctgatccgtcctccgtcgttttgctgtg-cacagGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: GRMZM2G084757_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttcttggccctac--cgctgatgccctctccgattc---gcatgtgt-ggggctttacggtatgttgcacc-----------gtttctcgctgtggcgc-agGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC
|| ||  |   ||  | |  | ||       ||||   |||   ||   | |  ||| ||| || | ||| ||  |            ||  |||  |||||   |||||| ||||||||||| |||||| ||||||| | |||||||||||| |||||| ||||| | ||  | ||| | || ||||||||  | ||||| ||  |
gtaagcaccaagctttccttcactctctttttctctacttccaagcggatattagggttttccgatttgtggcttcctgttattggcattgttcgtggtggcattagGGGCTTACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAATCCGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCACCCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211514784|gb|FK986196.1|FK986196
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133310|gb|FK986218.1|FK986218
EST:     TCTCCGCACACACCCTCCCTACCTCGCCKTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133304|gb|FK986212.1|FK986212
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|148999436|gb|EE036388.2|EE036388
EST:     CTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514778|gb|FK986190.1|FK986190
EST:     GCACACACCCTCCCTACCTCCCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: GCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|149082153|gb|EE171333.2|EE171333
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|37423630|gb|CF649543.1|CF649543
EST:     CGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133311|gb|FK986219.1|FK986219
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133312|gb|FK986220.1|FK986220
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133314|gb|FK986222.1|FK986222
EST:     ACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: ACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71324907|gb|DR799152.1|DR799152
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71330222|gb|DR801860.1|DR801860
EST:     CCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|15199196|gb|BI423708.1|BI423708
EST:     CGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517135|gb|FK986205.1|FK986205
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|26457163|gb|CA828746.1|CA828746
EST:     CCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|28873467|gb|CB329452.1|CB329452
EST:     CACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517140|gb|FK986210.1|FK986210
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514779|gb|FK986191.1|FK986191
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514783|gb|FK986195.1|FK986195
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211512424|gb|FK986177.1|FK986177
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAKTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517137|gb|FK986207.1|FK986207
EST:     TCTCCGCACACACCCTCCCTAAGTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTGATGGAGAAGGAAGCAATCCGACGTG
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTT-ATGGAGAAGGAAGCAATCCGACGTG
EST: gi|71417010|gb|DR803889.1|DR803889
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514781|gb|FK986193.1|FK986193
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211512423|gb|FK986176.1|FK986176
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514775|gb|FK986187.1|FK986187
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133315|gb|FK986223.1|FK986223
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|213192348|gb|FM188700.1|FM188700
EST:     CCTA-CTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514777|gb|FK986189.1|FK986189
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|28873328|gb|CB329331.1|CB329331
EST:     GCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: GCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|87156655|gb|DY401444.1|DY401444
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71319466|gb|DR796477.1|DR796477
EST:     CCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133316|gb|FK986224.1|FK986224
EST:     TCTCCGCACACACCCTCCCTACCTCGCYGTCGCCGTCGCATCTGCCATGG                         K
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcag-
EST: gi|211133316|gb|FK986224.1|FK986224
EST:     TCTCCGCACACACCCTCCCTACCTCGCYGTCGCCGTCGCATCTGCCATGG                         K
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcag-
EST: gi|9952705|gb|BE639168.1|BE639168
EST:     CCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211512427|gb|FK986180.1|FK986180
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71322048|gb|DR797711.1|DR797711
EST:     CCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514771|gb|FK986183.1|FK986183
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517127|gb|FK986197.1|FK986197
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517136|gb|FK986206.1|FK986206
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517138|gb|FK986208.1|FK986208
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71306168|gb|DR789227.1|DR789227
EST:     CGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514774|gb|FK986186.1|FK986186
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133306|gb|FK986214.1|FK986214
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|78110574|gb|DV528982.1|DV528982
EST:     CTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517129|gb|FK986199.1|FK986199
EST:     TCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|22935646|gb|BU571921.1|BU571921
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|14997234|gb|BI319246.1|BI319246
EST:     ATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: ATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|9028805|gb|BE238845.1|BE238845
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517134|gb|FK986204.1|FK986204
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514782|gb|FK986194.1|FK986194
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|15208776|gb|BI430660.1|BI430660
EST:     GCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: GCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|94472092|gb|EB701050.1|EB701050
EST:     CTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211512425|gb|FK986178.1|FK986178
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517128|gb|FK986198.1|FK986198
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514772|gb|FK986184.1|FK986184
EST:     TCTCCGCACACACCCTCCCTACCTCGCCKTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|93014358|gb|EB639878.1|EB639878
EST:     CGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACATCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|9794847|gb|BE553155.1|BE553155
EST:     ACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: ACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|9732161|gb|BE510913.1|BE510913
EST:     CCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|15499328|gb|BI595841.1|BI595841
EST:     CGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514773|gb|FK986185.1|FK986185
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|149021964|gb|EE045839.2|EE045839
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|22543255|gb|BU093693.1|BU093693
EST:     CTACCTCGCCGTCGCCGTCGCATCTTCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211512426|gb|FK986179.1|FK986179
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|28987123|gb|CB351475.1|CB351475
EST:     CCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|31360949|gb|CD445306.1|CD445306
EST:     TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517133|gb|FK986203.1|FK986203
EST:     TCTCCGCACACACCCTCCCTACCTCGCNNTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514770|gb|FK986182.1|FK986182
EST:     TCTCCGCACACACCCTCCCTACCTCGCYKTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133307|gb|FK986215.1|FK986215
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211514776|gb|FK986188.1|FK986188
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211133308|gb|FK986216.1|FK986216
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211517132|gb|FK986202.1|FK986202
EST:     TCTCCGCACACACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71427901|gb|DR808951.1|DR808951
EST:     TCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: TCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|71318763|gb|DR796136.1|DR796136
EST:     CGCCGTCGCCGTCGCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: CGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
EST: gi|211323265|gb|FL262054.1|FL262054
EST:     GCATCTGCCATGG                         GGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA
genomic: GCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 228

AAGTCCCTCCCACGCCGCCGCCACCTAAACCTCCTCACTCCTCAGACTCCTCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 89

AAGTCCCTCCCACGCCGCCGCCACCTAAACCTCCTCACTCCTCAGACTCCTCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 61

AAGTCCCTCCCACGCCGCCGCCACCTAAACCTCCTCACTCCTCAGACTCCTCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 108

AAGTCCCTCCCACGCCGCCGCCACCTAAACCTCCTCACTCCTCAGACTCCTCTCCGCACATACCCTCCCTACCTCGCCGTCGCCGTCGCATCTGCCATGGgtgagttctt ... tgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcgcatgtgtggggctttacggtatgttgcaccgtttctcgctgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC
                                     tttctcgct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcttggccctaccgctgatgccctctccgattcgcatgtgtggggctttacggtatgttgcaccgtttctcgctgtggcgcagGGGCGTACAAGTACGTCTCGGAGTTATGGAGAAGGAAGCAATCCGACGTGATGCGGTTCGTTCAACGCGTGCGCTGTTGGGAGTACAGGCAGCAGCCGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT