Sequence
atgc intronic sequence ATGC exonic sequence...gtgaatgacatatcattcattatgctgctccgggttctagattaaatttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G084647_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g31380.1 (Oryza sativa), 3'ss of exon 1
gtgaatgacatatcattcattatgctgctccgggtt-ctagattaaatt-tttgtgtacactttccatgggaattgacac-taacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
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atgattgttatttacttc--ta-gttgctccacatttctttatggcatcctttgtgttgttctgactaaagagttaacacctaaaaaattttctatgtttcagTCTTGGGATGCCACTTCCATTTCTTTGTCTGCCGCATGTGATTTGTTCATGCGGTTTGTAACAAGAACATCACATTTGGAGCATGAGAAGTTTGATGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211260422|gb|FL227455.1|FL227455EST: CCATGATGGAGCTCGAGATCGAGCTCAAGAAGGCATCTGACAAGCTCAAG TCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATG
genomic: CCATGATGGAGCTCGAGATCGAGCTCAAGAAGGCATCTGACAAGCTCAAGgttgataacc ... tgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
cactaac putative branch site (score: 1)
ttatgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatgacatatcattcattatgctgctccgggttctagattaaatttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT