1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgaatgacatatcattcattatgctgctccgggttctagattaaatttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
species | Zea mays |
transcript | GRMZM2G084647_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACAAGCTCAAG TCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGEST: gi|211260422|gb|FL227455.1|FL227455
genomic: GACAAGCTCAAGgttgataacc ... tgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATG
EST: CCATGATGGAGCTCGAGATCGAGCTCAAGAAGGCATCTGACAAGCTCAAG TCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATG
genomic: CCATGATGGAGCTCGAGATCGAGCTCAAGAAGGCATCTGACAAGCTCAAGgttgataacc ... tgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATG
atttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
cactaac putative branch site (score: 58)
ttatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgacatatcattcattatgctgctccgggttctagattaaatttttgtgtacactttccatgggaattgacactaacagtgcttatgtattccagTCCTGGGATGCTACATCCATTTCTCTTTCTGCTGCTTGTGATTTGTTCATGCGGTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
gtgaatg
- - - - - - -cattcat
- - - - - - - - - - - -gctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctta