1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaatactgcatccctttcttgttatctttccctagctaccgcgctctgagttctcttcaatttggttcttccatgtatgaattcatgtctgcaattaaccacaaaattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTGTCAAAAGGATTAGAGGAGCGACCTGCAGCTTACAATTGCTATGACCCT
species | Zea mays |
transcript | GRMZM2G083749_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|211077489|gb|FL419989.1|FL419989
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|91874519|gb|EB404476.1|EB404476
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|78115486|gb|DV533874.1|DV533874
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|101386436|gb|EB815235.1|EB815235
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|211434382|gb|FL408927.1|FL408927
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|149055404|gb|EE156323.2|EE156323
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|211084381|gb|FL369930.1|FL369930
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|50339291|gb|CO534417.1|CO534417
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|94472188|gb|EB701146.1|EB701146
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|148932563|gb|EC876392.2|EC876392
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|148981124|gb|EE027442.2|EE027442
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTEST: gi|149095094|gb|EE180702.2|EE180702
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
EST: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCT TGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
genomic: CATGATGGCCGGGAAAGCAGCATGCCGGAGTCATGGAGCCAGCTGCTTCTgtaaatactg ... aattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACT
atttggttcttccatgtatgaattcatgtctgcaattaaccacaaaattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTGTCAAAAGGATTAGAGGAGCGACCTGCAGCTTACAATTGCTATGACCCT
aattaac putative branch site (score: 2)
aaaattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatactgcatccctttcttgttatctttccctagctaccgcgctctgagttctcttcaatttggttcttccatgtatgaattcatgtctgcaattaaccacaaaattgaacagTGGGGGATTAGTCGGAGATCACGAGAGATACAACGCTGCCACAGCTTTACTGTCAAAAGGATTAGAGGAGCGACCTGCAGCTTACAATTGCTATGACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT