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...tattgtgaatttttaacctttgttgacgtctggagcacacagcgctgcagctaagaaaattatttttctggtcattagtaacaggaattttctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG
species | Zea mays |
transcript | GRMZM2G083344_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|78104083|gb|DV522501.1|DV522501
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|149009525|gb|EE041508.2|EE041508
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|71439302|gb|DR820352.1|DR820352
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|78087779|gb|DV516172.1|DV516172
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|148961156|gb|EE011865.2|EE011865
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|31909719|gb|CD651060.1|CD651060
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|28931223|gb|CB334584.1|CB334584
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|71768356|gb|DR966293.1|DR966293
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|211525181|gb|FL202007.1|FL202007
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|61119701|gb|DN560662.1|DN560662
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|91055754|gb|EB166172.1|EB166172
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|76930051|gb|DV172256.1|DV172256
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|211525176|gb|FL202002.1|FL202002
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|94477389|gb|EB706347.1|EB706347
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|149095075|gb|EE180680.2|EE180680
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|149078938|gb|EE167774.2|EE167774
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG ATAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCACCTCTTGTCACAGGEST: gi|28390338|gb|CB250166.1|CB250166
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGEST: gi|148962629|gb|EE013519.2|EE013519
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
EST: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGG AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
genomic: CGGCGGTTCCTCTGCGATGCTGCGGCCGGAGCCTCCTCAGGTCCCGCTGGgttagtgcat ... tctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGG
tgcagctaagaaaattatttttctggtcattagtaacaggaattttctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG
tagtaac putative branch site (score: 1)
ttttctatt putative PPT
taagaaaattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtgaatttttaacctttgttgacgtctggagcacacagcgctgcagctaagaaaattatttttctggtcattagtaacaggaattttctattacagAGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - tttgttg
- - - - - - - - - - - - - - -ctggagc
- - - - - - - - - - - - - - - - - - - - - -gctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa