Sequence
atgc intronic sequence ATGC exonic sequence...cttaaaaatggagcacataatattcctttgcttctgtagggcattgcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G083095_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g59020.1 (Oryza sativa), 3'ss of exon 5
cttaaaaatggagcacataatattcctttgcttctgtagggcattgcaag--ctgtaatctgcaagtatctgttggaatcta-----taatacctgtgcttttg--cagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
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-------ctgaccagcacagggttc--ttgcttctgtagtttatcaaaagcactgtcttccacaaatatcttctgcagagtaggcactcatacttgtactgttgtgcagCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTG
upper sequence: GRMZM2G083095_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA02G07910.1 (Glycine max), 3'ss of exon 5
cttaaaaatg---gagcacataatattcctttgcttctgtagggc-attgcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
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cttgagattttatgggccaatattttccccgtgtttttcttgaattattttatgtttttttctaattggatttgtt----cccttcatttttttatttatatagCTAGAAAATTATTCAAAAACTGAAGAGGCTAAAGTAGAGGAGCTCATCAAGGCAGTAGCAGATTCAGGTGCCAAAGTGATTGTCAGTGGAGGAGCAGTAG
upper sequence: GRMZM2G083095_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT3G03960.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------cttaaaaatggagcacataatattcctttgcttctgtagggcattgcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
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gttagatttgttactgtctttctaaaatttcaaaattacgattatggcttcctcaaagatggttgtgtat-ttgtaatc-gttattgtg-acaaatttctctttttatattggatttgtagCTAGAGAACTATGCAAAGACAGAGGAAGCTAAAGTTGAGGAGTTGATTAAAGCAGTTGCGGAATCAGGAGCCAAAGTCATTGTTAGTGGAGGATCAATTG
upper sequence: GRMZM2G083095_T03 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 5
---------cttaaaaatggagcacataatattcctttgcttctgtagggcattgcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
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atattgttacatatacatgaatttggaaataatttgtgaattcctttgcttatttgatgctatatttcactgaaccct---------tatttttgttgttgcattgcagCTTGAGAATTATGCAAAAACTGAAGAAGCCAAAATTGAAGAGCTCATCAAAGCTGTTGCAGATTCAGGTGCCAAAGTAATTGTTAGTGGAGGGGCAGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93011933|gb|EB637453.1|EB637453EST: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
genomic: CCTCAGCAACCGAAACAAAGGGAACAGTGTTGATCCATTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
EST:
gi|24773918|gb|CA409172.1|CA409172EST: TTCCGCTGAGCAG CTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
genomic: TTCCGCTGAGCAGgtatgttctt ... gcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
tgctttt CT-rich tract
aatctataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttaaaaatggagcacataatattcctttgcttctgtagggcattgcaagctgtaatctgcaagtatctgttggaatctataatacctgtgcttttgcagCTAGAAAATTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATAAAAGCTGTTGCTGACTCAGGTGCCAAGGTTATTGTCAGTGGAGCTGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG