Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC

Basic information

species Zea mays
transcript GRMZM2G083076_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g11570.1 (Oryza sativa), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatc---accttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
  || ||| |   | || | |    |    | |  |      ||||| | | ||| |  | |    ||||   ||||||| | |   | |  |||| |||||||| || |||||  |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |
--aaatttactcttgttgtttgaaccttgcttaggtttgtaactgctgtgt-tgtgccttctgcgtttttgcaattctaacagcggcatccattctcctacagACGGGTGACACCCTCATACAGCTCTACAACAATTTCATCACTGATTTCGAGACGAAGATCAATCTTCTCAAACTTGCGCATTTCGCGGTCATCGCTTCGC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g32800.1 (Oryza sativa), 3'ss of exon 1
---taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtc-ttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
      | | |  |||| ||  |||  | |||  ||   ||  ||||     || |  |||  |  |   |  |   |||||||   ||    |||| | |||||| || ||||| ||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||| ||||| |||||||| || ||||| || ||||| |
tagctgaatgtttcaatcttggattacttcaa--caac-catatgcttagggtttta-actgatgggcaatcctgcaattctaacggcattcattctcccacagACTGGCGACACCATCATACAGCTCTACAACAATTTCATCTCTGACTTCGAGACGAAGATCAATCTTCTCAAACTTGCCCACTTCGCGGTCATCGCTTCAC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34310.2 (Glycine max), 3'ss of exon 2
-------taaagtttgccaattttata---ttgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGAC-CAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
       |  | |      || | | |   |  |  ||     |   ||      | |  |    |  |||     ||||    || || | || |       |    | |  | ||   || |   | |  |||   |    |   |||   | ||  |||| | |||       ||  |      || ||                   
gtgatgctttaatacaattatatcacaatttcatcacagactttgagacgaaaatcaaccttctcaagcttgcacattttgctgttatagTTTCTCGGCAGTATTCTGAAAAAGAAGCTGCTGTTGGTTA--TCTTGGAGGGGTCATTCAGAAACTTCAAGACACTAGAGAGCAGCGCATAGAAGAACCTAT-------------------

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G01460.1 (Glycine max), 3'ss of exon 1
taaagtttgccaattttatatt-gttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
| |  |||    |    ||||| || |   |  ||  ||  || |  ||||   ||     | | ||| ||       |  |    ||| |   | | ||| |||| ||  |  | || ||  | ||  ||||||||||||| || ||||||||||| || || || ||||||||||| ||||| || || |||| |||||
tgacttttattgaaacaatatttgtactctgatatg-catgtgttcttattatagtttaaatgtatctgtttcacaaatggttcttcctataaattttcagGCCGGTGATGCATTAATACAATTATATCACAATTTCATCACAGACTTTGAGACCAAAATCAACCTTCTCAAGCTTGCGCATTTCGCTGTTATAGTTTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtc-atttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
    |  | | | |   | | | |||  | ||   |   | |  |  ||||   ||     ||| | | ||          |    ||| |   | | ||| | || ||  || | || ||  | ||  ||||||||||||| || |||||||| || || || || ||||||||||| |||||||| || |||| |||||
-gttgacttctattgaaacaatattcatactctgatgtgcatattcttattatagtttaaatttatttgtttgacaaacggttcttcctataaattttcagGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT5G45620.2 (Arabidopsis thaliana), 3'ss of exon 1
-taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttctt-ctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
 ||   |||     || || ||   |     |   ||| |  | |  | | |||| |   |    | | | ||  || |||||| |  |||| |   | ||| | || ||  || | |||||| ||||  |||||||||||||||| |||||||| ||||| ||||| || |||||||| |||||||| ||| | |  ||||
ttaggttttagggtttatagatcaattttgattgcttc-caagtttttgtgtctg-atcttaacctgtgtcattgttataatataattttttttcatttcagGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTGGTGGTCTCTC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT4G19006.1 (Arabidopsis thaliana), 3'ss of exon 1
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttt--tgtcttttatgattctaat-atcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
   | | |   |  |      |   | ||   | |   | |       |||    | |  ||  || | | | |    ||  | ||   | |    | | ||| | |||||  || | || ||||| |||||||||||||||||||| |||||||| | ||| ||||| || |||||||| ||||| || ||  |||  || |
-cgaatattttagctcagagatacccaaaa--actcagctttacaaggtttacagatttgttaatgacgtgtttccccctgtttatgttcataatctttgcagGCTGGAGATGCTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCGCTGTTGTAGTCTCCC

upper sequence: GRMZM2G083076_T03 (Zea mays), 3'ss of exon 2
lower sequence: PP1S66_117V6.1 (Physcomitrella patens), 3'ss of exon 1
taaagtttgccaattttatattg---ttccaagtcatttcacctgctgctatttctg-tactcttttgtcttttatgattctaatatcacctttt---cttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
       ||   ||||||||||    ||   | | | ||     | |  ||| | || ||| || |||     | |  |  | ||   |  || |   |   | ||| | ||||||||  |  ||||||| ||| | || || ||    || || ||||||||||| |||||||| ||||| || ||||||||||| || |  ||  
-------tgatcattttatatttatttttttatttagttattagggttttatgtgtgctacactgttgggaaatgttgtgttgatgggattttatggacgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGACCAAGATCAATCTGCTTAAGCTGGCTCATTTTGCGGTCATTGTATCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211130399|gb|FL313020.1|FL313020
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119853|gb|FL011673.1|FL011673
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148960706|gb|EE011347.2|EE011347
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148972928|gb|EE023946.2|EE023946
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211232990|gb|FL338434.1|FL338434
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211052314|gb|FL323616.1|FL323616
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119856|gb|FL011676.1|FL011676
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|87156736|gb|DY401525.1|DY401525
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|109637437|gb|EC590982.1|EC590982
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|21987705|gb|BQ779233.1|BQ779233
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211055964|gb|FL348934.1|FL348934
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211232989|gb|FL338433.1|FL338433
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTNCAGGNCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211187798|gb|FL309838.1|FL309838
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211422678|gb|FL350032.1|FL350032
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119855|gb|FL011675.1|FL011675
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211158710|gb|FL325492.1|FL325492
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148960655|gb|EE011285.2|EE011285
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148967525|gb|EE018769.2|EE018769
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211129644|gb|FL330774.1|FL330774
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211118712|gb|FL311652.1|FL311652
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|149073975|gb|EE162304.2|EE162304
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120633|gb|FL011683.1|FL011683
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120634|gb|FL011684.1|FL011684
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211451456|gb|FL365485.1|FL365485
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|149111478|gb|EE294982.2|EE294982
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211283553|gb|FL347785.1|FL347785
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|74035183|gb|DT535673.1|DT535673
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211037319|gb|FK949903.1|FK949903
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|31997885|gb|CD661819.1|CD661819
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211440200|gb|FL323450.1|FL323450
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCA
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCA
EST: gi|148956859|gb|EC902774.2|EC902774
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211300416|gb|FL361790.1|FL361790
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211406533|gb|FL321355.1|FL321355
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119859|gb|FL011679.1|FL011679
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211120636|gb|FL011686.1|FL011686
EST:     GCCAGCTCACCCTCAAGCTCGACCAATTCCTGCAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGGCTCTACAACAATTTCATCACTGATTTTGA
genomic: -CCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAG-CTCTACAACAATTTCATCACTGATTTTGA
EST: gi|78103810|gb|DV522238.1|DV522238
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|26558774|gb|CA831009.1|CA831009
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211216374|gb|FL354226.1|FL354226
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|22472868|gb|BU037348.1|BU037348
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|22473039|gb|BU037504.1|BU037504
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119854|gb|FL011674.1|FL011674
EST:     ACCAGCTCACCCTCAARCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTYTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|148930111|gb|EC872433.2|EC872433
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211119857|gb|FL011677.1|FL011677
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: gi|211338216|gb|FL361337.1|FL361337
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCATGCCGCACAK                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTTGA
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTT-GA
EST: gi|149015027|gb|EE044773.2|EE044773
EST:     ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG                         ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC
                             ttctaat  putative branch site (score: 2)
                                   tatcaccttttcttct  CT-rich tract
                     ttttatgattctaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaagtttgccaattttatattgttccaagtcatttcacctgctgctatttctgtactcttttgtcttttatgattctaatatcaccttttcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGACCAAGATTAATCTGCTCAAGCTTGCCCATTTTGCGGTGATAGCTTCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT