Sequence
atgc intronic sequence ATGC exonic sequencegtgagtcatcagtcaactccctctccggctccctgtcgcgcacgccacggcgcacccgtactgggaggagggaggattcttgtttgagagccgtcgctcacgccgatcgcggcttttcagGACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGGGCCCCCGGCGGCCCGGTCTTCCTGCGCATCTGCGGCGAGTCCGCCTGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G082502_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g36780.1 (Oryza sativa), 3'ss of exon 1
gtgagtcatcagtcaactccctctccggctccctgtcgcgcacgccacggcgcacccgtactgggaggagggaggattcttgt-ttgagagccgtcgctc--acgccgatcgcggcttttcagGACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGGGCCCCCGGCGGCCCGGTCTTCCTGCGCATCTGCGGCGAGTCCGCCTGCG---
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--------------------gtattagttttaatatcaggg--gctgatatgtaatgtcgcgagaaacaaaaaagttctttgggtttagcgccctcgcgctgatgtcgccggcggcgtg-cagGACCACCGCCAGTTCAAGCAGCGGTACTACGAGTTCGCCGACTACCAC---GCCGGCGGCGGCCCGGTGTTCCTGCGCATCTGCGGCGAGTCCTCCTGCAACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74233811|gb|DT641725.1|DT641725EST: CGAAGGACGAGCGGTGGATGAACCAGCGCCTCGACCACTTCTCCCCCACC GACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGG
genomic: CGAAGGACGAGCGGTGGATGAACCAGCGCCTCGACCACTTCTCCCCCACCgtgagtcatc ... ggcttttcagGACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggagggaggattcttgtttgagagccgtcgctcacgccgatcgcggcttttcagGACCACCGGCAATTCAAGCAGCGCTACTTCGAGTTCCTCGACTACCATCGGGCCCCCGGCGGCCCGGTCTTCCTGCGCATCTGCGGCGAGTCCGCCTGCG
cgctcac putative branch site (score: 3)
cttttc putative PPT