1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacagtagctaccttgttaattcatgcctccagcatgattctccgttgtgctccatctgtttgttgcttgaccttgcgccttgttattctgccatttggttgaggatagattaatcctcaattgtctgacaattgttcacgtctaatttagGTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG
species | Zea mays |
transcript | GRMZM2G082174_T06 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGACGCCTTTAAAACAAGGGTCTTCTCTGTATTAAATATTTTCTGAT GTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCAEST: gi|86465708|gb|DY232081.1|DY232081
genomic: AGGCGACGCCTTTAAAACAAGGGTCTTCTCTGTATTAAATATTTTCTGATgtacagtagc ... tctaatttagGTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCA
EST: AGGCGACGCCTTTAAAACAGGGGTCTTCTCTGTATTAAATATTTTCTGAT GTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCA
genomic: AGGCGACGCCTTTAAAACAAGGGTCTTCTCTGTATTAAATATTTTCTGATgtacagtagc ... tctaatttagGTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCA
tggttgaggatagattaatcctcaattgtctgacaattgttcacgtctaatttagGTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG
gtctaat putative branch site (score: 130)
atagattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtagctaccttgttaattcatgcctccagcatgattctccgttgtgctccatctgtttgttgcttgaccttgcgccttgttattctgccatttggttgaggatagattaatcctcaattgtctgacaattgttcacgtctaatttagGTTTTTTCGGCATTTGGGTTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG
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