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...tccatcaattgctactctgagaatactgcagttaagaaaattttcaagtacaacctttgcactgctacaattttaacctgttacttattttttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG
species | Zea mays |
transcript | GRMZM2G081812_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|71325031|gb|DR799198.1|DR799198
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|74034907|gb|DT535397.1|DT535397
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGNGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATCTGGEST: gi|26457010|gb|CA828593.1|CA828593
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCAGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACAGAGATAGAGATATTTGGEST: gi|211108805|gb|FL115292.1|FL115292
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|22818963|gb|BU499053.1|BU499053
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCAGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACAGAGATAGAGATATTTGGEST: gi|211109705|gb|FL115302.1|FL115302
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|87155380|gb|DY400169.1|DY400169
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCAGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACAGAGATAGAGATATTTGGEST: gi|29946767|gb|CB816315.1|CB816315
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: CACAAGGAGTCCG-GACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|32910104|gb|CF014916.1|CF014916
genomic: CACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|20507162|gb|BQ279513.1|BQ279513
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCAGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACAGAGATAGAGATATTTGGEST: gi|211108807|gb|FL115294.1|FL115294
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGEST: gi|211108808|gb|FL115295.1|FL115295
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAA GGTTCCTAATGCAAAGCCTGCATAGGGAGTCAACGGAGATAGAGATATTTSEST: gi|26559878|gb|CA832113.1|CA832113
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTG-ATAGGGAGTCAACGGAGATAGAGATATTTG
EST: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCAGTGACCAA GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACAGAGATAGAGATATTTGG
genomic: TCTGGCATGGCCATACACGTCCTCCAGGTCCACAAGGAGTCCGTGACCAAgtgagaacag ... tttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGG
aagtacaacctttgcactgctacaattttaacctgttacttattttttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG
ttttaac putative branch site (score: 53)
cttatttttt putative PPT
ttacttattttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcaattgctactctgagaatactgcagttaagaaaattttcaagtacaacctttgcactgctacaattttaacctgttacttattttttactacagGGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - -tgctact
- - - - - - - - - - - - actgcag
- - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact