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gtaaggaatccccttttaaggtttgctcgggttcctcttcctgctgcgattcatcccgttcttgccgtctacggttcaccccgttcgtccatcgcagatttgtccatatcagactttttttcccgctgctgtttttgagtcagaccgcgcgtgctgaattgtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGCTTGCTGTTTCTGCTGCTGCTGCTGGCATCGTCGTCGTTACTGTCCGCT
species | Zea mays |
transcript | GRMZM2G081682_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211075605|gb|FL344132.1|FL344132
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211288683|gb|FL312634.1|FL312634
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211328969|gb|FL341564.1|FL341564
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|71426924|gb|DR807974.1|DR807974
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211416745|gb|FL321410.1|FL321410
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TCCAGGTCCAGCAGAGATTGGGGGCCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|74245361|gb|DT653275.1|DT653275
genomic: TCCAGGTCCAGCAAAGATT-GGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|74232804|gb|DT640718.1|DT640718
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: CAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211420503|gb|FL364960.1|FL364960
genomic: CAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211457434|gb|FL331063.1|FL331063
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|32866060|gb|CF005742.1|CF005742
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|32909379|gb|CF014191.1|CF014191
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211310239|gb|FL338849.1|FL338849
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211149448|gb|FL325049.1|FL325049
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211140891|gb|FL328471.1|FL328471
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGEST: gi|211320715|gb|FL358326.1|FL358326
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
EST: TTCCAGGTCCAGCAGAGATTGGGGGCGCGTGGGCATCGGAGATTGCCTCG GGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
genomic: TTCCAGGTCCAGCAAAGATTGGGGACGCGTAGGCATCGGAGATTGCCTCGgtaaggaatc ... gtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCG
ttttttcccgctgctgtttttgagtcagaccgcgcgtgctgaattgtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGCTTGCTGTTTCTGCTGCTGCTGCTGGCATCGTCGTCGTTACTGTCCGCT
tgttctc CT-rich tract
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaatccccttttaaggtttgctcgggttcctcttcctgctgcgattcatcccgttcttgccgtctacggttcaccccgttcgtccatcgcagatttgtccatatcagactttttttcccgctgctgtttttgagtcagaccgcgcgtgctgaattgtgttctcagGGAGCGCGTTTCCTGGTCAACTAAGGCCGGCATGAAGGGCTGCTCAGAGCGCTTGCTGTTTCTGCTGCTGCTGCTGGCATCGTCGTCGTTACTGTCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT