1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgaaatttaccgagctaacaaaaagtgaatttcgttatacatgttaaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
species | Zea mays |
transcript | GRMZM2G081642_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|71436402|gb|DR817452.1|DR817452
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|149069965|gb|EE158364.2|EE158364
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
aaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
tgttaat putative branch site (score: 64)
tatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatttaccgagctaacaaaaagtgaatttcgttatacatgttaaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatc