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...tgaaatttaccgagctaacaaaaagtgaatttcgttatacatgttaaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
species | Zea mays |
transcript | GRMZM2G081642_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|26455576|gb|CA827159.1|CA827159
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|37424864|gb|CF650166.1|CF650166
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|21481543|gb|BQ578226.1|BQ578226
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|148941968|gb|EC886955.2|EC886955
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|71436402|gb|DR817452.1|DR817452
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|149069709|gb|EE158095.2|EE158095
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|101394355|gb|EB819112.1|EB819112
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|149041290|gb|EE046926.2|EE046926
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCEST: gi|213187018|gb|FM194143.1|FM194143
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGC
EST: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCG GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCNNNG
genomic: TGAGGCGCCATGATCGAGCAGTTCGTTAATTTCGTCATCCGGCCGCCCCGgtacgcgctg ... taatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCC-TTG
aaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
tgttaat putative branch site (score: 3)
tatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatttaccgagctaacaaaaagtgaatttcgttatacatgttaaggattcatctatgtatttaggtgtattggaactgaatcagtgttaatttgcagGTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG