1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgcacttgtaaatggatgaactgatataatctaccgttcatttcgattcaaaggaccttgtctgcttgaataactgtttgtacttttttacatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCTGGGAAAACGTCACTTGTGAACTCTATTGCT
species | Zea mays |
transcript | GRMZM2G081622_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTTCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|9566366|gb|BE475875.1|BE475875
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|32800459|gb|CD952695.1|CD952695
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: TAACTGGCTCCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|211212173|gb|FL397456.1|FL397456
genomic: TAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTTCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|211536538|gb|FL409971.1|FL409971
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTTCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|149086640|gb|EE176182.2|EE176182
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|148949509|gb|EC894973.2|EC894973
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|78105314|gb|DV523732.1|DV523732
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|211135638|gb|FL266964.1|FL266964
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTTCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|211184547|gb|FL382110.1|FL382110
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTTCGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCEST: gi|76283087|gb|DV022655.1|DV022655
genomic: GGACCCGGCGCCATGGGGTTCTGGGAGGCTTTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
EST: TTTCTTAACTGGCTCGGCAG CCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
genomic: TTTCTTAACTGGCTCCGCAGgtacgatgct ... acatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGC
gattcaaaggaccttgtctgcttgaataactgtttgtacttttttacatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCTGGGAAAACGTCACTTGTGAACTCTATTGCT
gaataac putative branch site (score: 79)
cttttttac putative PPT
tttgtactttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcacttgtaaatggatgaactgatataatctaccgttcatttcgattcaaaggaccttgtctgcttgaataactgtttgtacttttttacatctgcagCCTCTTCTTCAAGCAAGAGATGGAGCTTTCCTTGATAGGGCTCCAAAATGCTGGGAAAACGTCACTTGTGAACTCTATTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-tgcactt
- - - - - - atggatg
- - - - - - - - - - - - - - - - - - -ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttt