1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttcctcctccgcctccatgacctcgtcgtcagagctcgggctccgactgtcacctcatcgccaccagcgctgccgtacttatcatgcgttggggttgacgggttttgatgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACCTCCCCGCCGCCATCTCTGGCGTCCGCGGTGCGGCCAAGAGCAGGGACG
species | Zea mays |
transcript | GRMZM2G081380_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACEST: gi|71313366|gb|DR793232.1|DR793232
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACEST: gi|211325002|gb|FL127014.1|FL127014
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: ACCTGCTGCGTCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGATEST: gi|91048165|gb|EB158583.1|EB158583
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACEST: gi|101398956|gb|EB821350.1|EB821350
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACEST: gi|148970201|gb|EE021132.2|EE021132
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: GCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACEST: gi|149081443|gb|EE170567.2|EE170567
genomic: GCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
EST: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAG TATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
genomic: ACCTGCAGCGCCGCTTCACGCAGGCCGAACTTCGCGCGCTCCAGGCCCAGgtatttcctc ... tgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGAC
ccagcgctgccgtacttatcatgcgttggggttgacgggttttgatgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACCTCCCCGCCGCCATCTCTGGCGTCCGCGGTGCGGCCAAGAGCAGGGACG
ttttgat putative branch site (score: 4)
tacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcctcctccgcctccatgacctcgtcgtcagagctcgggctccgactgtcacctcatcgccaccagcgctgccgtacttatcatgcgttggggttgacgggttttgatgtctggcagTATGCGGCGCTGCGGGACGCGTCGCCTAACGGGAGGCTGCGGATGCGGGACCTCCCCGCCGCCATCTCTGGCGTCCGCGGTGCGGCCAAGAGCAGGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG