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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA

Basic information

species Zea mays
transcript GRMZM2G081102_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA------------
          |  || |   || |  ||    |  |  ||||||  |  ||  |  ||  | |     |  ||     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||            
--------ttgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataat--ctaacctgttgtcgtggttgactt-taatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA------------
           |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||            
-----------gtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
tggagctggcggcagctcgttgattcttgttc-ccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-------
    | ||   |    |  |    | || | | |  |  ||||||  |  ||  |  ||  | |     |  ||     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||       
----gttgattgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataat--ctaacctgttgtcgtggttgactt-taatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-------
      ||   |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||       
------tgtttgtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgtt-gctcgtct----ctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAG---AGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA---------
                   ||| || |       | ||| |  || || | |   ||    ||| | |     |||   ||   ||     |||||     | |        |  ||     |  |||    ||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||         
-----------------ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgtt--gttgatgtgtacag-gtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-------------------
                      | | ||| |   ||    || |    | |    |||  ||||    | |||  |  |||  ||| ||    |    |||| |            |     ||   |||||||||||||||| ||||| | |   |||||    |||||||||||||| ||||||||||| ||||| |||||                   
---------------------taatgttgcttgtgtaacatgattagggttgaaatcta-tgattattttacttctctgtttagtttattctcatgttgtaacatttgtgtttgttgcttagAAAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGG

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatg-tgtacaggtaagAAGGAGAGAAAGAGG-GCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-------------
                |  || ||||   ||   ||| |    | |  | |  | | ||  |  ||    |  |     ||  ||||| | |   | |      |  |   | |||   |  ||||| ||||| ||||| ||  | || || |||||||||||||| || |||||||| |||||||| || ||||| |||||             
-------------tcttttttcattcagatttttgtgtttcttttga-gttattttgtgacggagctaa-atcgcaaaatttgtgatggtattttgtttgtgctgccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
tggagctggcggcagctcgttgattc--ttgttcccgtggtgtgct----cgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------
    ||   | ||  || | || |||  | |||  | |||||   |    |   | |    |||| ||        |  || | |||  ||||| ||   | |   | |   ||        |   ||||||||||| ||||||||||| ||||| || |||||||||||| |||||||||||||||| | ||| |||||||||||          
----gccctccgc--cttgatgcttcagtagtttgcatggtgcattgtatcagggtttaggtctg-tgggaaaaaaaacgtagggtttctgatg-gtgttgctcgcagGTCTAG--------CACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------------------------------------------tggagctggcggcagctcgttga--ttcttgttcccg-tggtgtgctcgttgctcgtctct----------gctgatgccgtcactgt--------tgc---gttgttgatgtgtaca--------ggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------
                                                        |||| | | ||  ||| ||  |  | |||||    | |||| ||  |   | || || |           |  |||   ||     |        |||   ||||||||||| |||         ||| |  |  |   |  || |     ||||||||||| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||| | ||| |||||||||||          
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------tggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacaggtaagAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------
                                            ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||||          
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------tggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacaggtaagAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------------
                                            ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||||||||                
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA----------
| | | |||  |  ||  |  |||  ||||||  ||   |   || |          |   |      | ||  |  || ||| |  ||       |    |||       |  |||   ||||||||||| || || || |||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||||          
ttgtgatgg-agtggcgtgccgatg-ttgttcttgtctcgcattcctcatatagggtttaagggtttatgac-ataacgatgtcggagtcggtctattttcagG-------GTTGGCACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
tggagctg-gcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatg-tgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-----------
||     | | |||   |  |||  | |||||   ||  |  |        |  |    |  |     ||   ||| ||  | ||  || |||  | || |  ||  || | |          |||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| ||||| |||||           
tgtgatggagtggcgtatttttg--tgttgttgttgtaattcgtgaagcaataattagggtcgg-attgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACA----------TGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101398368|gb|EB821056.1|EB821056
EST:     CCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|76287867|gb|DV027435.1|DV027435
EST:     GCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: GCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211419059|gb|FL425549.1|FL425549
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|31909999|gb|CD651202.1|CD651202
EST:     CCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211029288|gb|FL369418.1|FL369418
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211112079|gb|FL283004.1|FL283004
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|32909677|gb|CF014489.1|CF014489
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32909677|gb|CF014489.1|CF014489
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|211485701|gb|FL425128.1|FL425128
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211466704|gb|FL410764.1|FL410764
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|76287200|gb|DV026768.1|DV026768
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211153124|gb|FL378534.1|FL378534
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|6918394|gb|AW399924.1|AW399924
EST:     CCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|32913244|gb|CF018056.1|CF018056
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32913244|gb|CF018056.1|CF018056
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32864594|gb|CF004276.1|CF004276
EST:     CACCCCACTGGGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32864594|gb|CF004276.1|CF004276
EST:     CACCCCACTGGGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|71441294|gb|DR822344.1|DR822344
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|32913278|gb|CF018090.1|CF018090
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32913278|gb|CF018090.1|CF018090
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|71300904|gb|DR786481.1|DR786481
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|19351348|gb|BM895880.1|BM895880
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211518135|gb|FL378867.1|FL378867
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211085123|gb|FL402165.1|FL402165
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211141936|gb|FL417375.1|FL417375
EST:     CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCTTCTACAGGTAAG                         AAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAAC
genomic: CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAAC
EST: gi|67030644|gb|CO459393.1|CO459393
EST:     CCCCGCTCCTCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|67030644|gb|CO459393.1|CO459393
EST:     CCCCGCTCCTCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|37421080|gb|CF648236.1|CF648236
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211266078|gb|FL031057.1|FL031057
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|28930879|gb|CB334240.1|CB334240
EST:     CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|32912920|gb|CF017732.1|CF017732
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32912920|gb|CF017732.1|CF017732
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32912809|gb|CF017621.1|CF017621
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32912809|gb|CF017621.1|CF017621
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|28930908|gb|CB334269.1|CB334269
EST:     TCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: TCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211112080|gb|FL283005.1|FL283005
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211314895|gb|FL369685.1|FL369685
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|71332917|gb|DR803481.1|DR803481
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|30704469|gb|CD058534.1|CD058534
EST:     CGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|211112082|gb|FL283007.1|FL283007
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|28987522|gb|CB351675.1|CB351675
EST:     CCCCGCTCCGCCTCCACTCCTCGCG-CGCTGCCGCATCTCCTCTACAGGAAG                      
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC----AGgtaagacctt ... tacaggt
EST: gi|211351235|gb|FL411969.1|FL411969
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg
EST: gi|32908172|gb|CF012985.1|CF012985
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32908172|gb|CF012985.1|CF012985
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32855685|gb|CD995366.1|CD995366
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|32855685|gb|CD995366.1|CD995366
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGG                         T
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACA-Ggtaagacctt ... tacaggtaag-
EST: gi|78082165|gb|DV510577.1|DV510577
EST:     CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGGTAAG                     
genomic: CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTAC-----AGgtaagacctt ... tacagg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-ggagctg
- - - - gcggcag
- - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - tgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat