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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC

Basic information

species Zea mays
transcript GRMZM2G081102_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------
               |  || |   || |  ||    |  |  ||||||  |  ||  |  ||  | |     ||  |     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||                 
-------------ttgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataatc--taacctgttgtcgtggttgactt-taatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------
   | | || |||         || |   |  || |       |   ||  || |         ||  ||  |||   | ||   |||| ||||||| |||||||    ||              ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||                 
-gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgtt-atgtgta-aggtaagCCAAAGCC------------ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
tagggtggagctggcggcagctcgttgattcttgttc-ccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------
         | ||   |    |  |    | || | | |  |  ||||||  |  ||  |  ||  | |     ||  |     ||||| |  ||  ||   |||   | |  | |||        ||||| ||||| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||            
---------gttgattgttagttatctgctattttacactatcttgtgcttatc-ctattaccttattacataatc--taacctgttgtcgtggttgactt-taatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------
           ||   |    |  |    | | ||| |  |    ||  | ||   |   |    |  | |     ||     ||||| |  |   ||  || |   | |  | |||     |  ||||| ||||| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| ||||||            
-----------tgtttgtgattgatctgctatggttacgctttcttgtgc-ttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgtt-gctcgtct----ctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAG---AGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC--------------
                        ||| || |       | ||| |  || || | |   ||    ||| | |     |||   ||   ||     |||||     | |        |  ||     |  |||    ||||||||||||| || |||||||| || |||||||| |||||||||||||| ||||||||||||||||||              
----------------------ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattc--ttgttcccgtggtgtgct----cgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
         ||   | ||  || | || |||  | |||  | |||||   |    |   | |    |||| ||        |  || | |||  ||||| ||   | |   | |   ||        |   ||||||||||| ||||||||||| ||||| || |||||||||||| |||||||||||||||| | ||| ||||||               
---------gccctccgc--cttgatgcttcagtagtttgcatggtgcattgtatcagggtttaggtctg-tgggaaaaaaaacgtagggtttctgatg-gtgttgctcgcagGTCTAG--------CACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------tagggtggagctggcggcagctcgttga--ttcttgttcccg-tggtgtgctcgttgctcgtctct----------gctgatgccgtcactgt--------tgc---gttgttgatgtgtaca--------gGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
                                                  | ||  |||| | | ||  ||| ||  |  | |||||    | |||| ||  |   | || || |           |  |||   ||     |        |||   ||||||||||| |||         ||| |  |  |   |  || |     ||||||||||| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||               
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------tagggtggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacagGTAAGAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
                                        ||| ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||               
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------tagggtggagctggcggcagctcgttgattcttgttcccgt--ggtgtgctcgtt----gctcgtctctg---ctgatgccgtcac-----tgttgcgttgttgatg-----tgtacagGTAAGAAGGAGAGAAAGAGGGCGAAA----TGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------------
                                        ||| ||  ||||| |   |  |  | |  ||  || |  |  || |   ||       ||||  ||  |   |||| | || |       ||||  ||| || |||     |  || | |      || | |   ||| | | |    |||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||                     
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
     | | | |||  |  ||  |  |||  ||||||  ||   |   || |          |   |      | ||  |  || ||| |  ||       |    |||       |  |||   ||||||||||| || || || |||||||| || |||||||||||| |||||||||||||||| | ||| ||||||               
-----ttgtgatgg-agtggcgtgccgatg-ttgttcttgtctcgcattcctcatatagggtttaagggtttatgac-ataacgatgtcggagtcggtctattttcagG-------GTTGGCACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
tagggtggagctggcggcagctcgt-tgattcttgtt-cccgtggtgtgctcgtt--gctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC----------------
|  | ||||| |||||     | || |  || ||||    ||||  |   |  ||  | |||  | || ||||| ||  | | ||| | |||  ||||| | || | | |                   ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| |||||                 
tgtgatggag-tggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggat-tgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC------------------ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211485701|gb|FL425128.1|FL425128
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32909677|gb|CF014489.1|CF014489
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211029288|gb|FL369418.1|FL369418
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32913244|gb|CF018056.1|CF018056
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32912920|gb|CF017732.1|CF017732
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211153124|gb|FL378534.1|FL378534
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|76012272|gb|DT939442.1|DT939442
EST:     CGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|31909999|gb|CD651202.1|CD651202
EST:     CCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|28930908|gb|CB334269.1|CB334269
EST:     TCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGG-GAAGCACAACAACG-CATCCC
genomic: TCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|28987522|gb|CB351675.1|CB351675
EST:     CCCCGCTCCGCCTCCACTCCTCGCG-CGCTGCCGCATCTCCTCTACAG                         G-AAGAAGGAGAGAAAGAGGGCGAAA-GGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|78084929|gb|DV513322.1|DV513322
EST:     CGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211112080|gb|FL283005.1|FL283005
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|76287867|gb|DV027435.1|DV027435
EST:     GCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: GCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211141936|gb|FL417375.1|FL417375
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCTTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|37421080|gb|CF648236.1|CF648236
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|71332917|gb|DR803481.1|DR803481
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|28930879|gb|CB334240.1|CB334240
EST:     CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211526948|gb|FL382812.1|FL382812
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACATCAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211089762|gb|FL378425.1|FL378425
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|13558997|gb|BG550352.1|BG550352
EST:     CCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211266078|gb|FL031057.1|FL031057
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211351235|gb|FL411969.1|FL411969
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211112084|gb|FL283009.1|FL283009
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211112079|gb|FL283004.1|FL283004
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|101398368|gb|EB821056.1|EB821056
EST:     CCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|76287200|gb|DV026768.1|DV026768
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211112082|gb|FL283007.1|FL283007
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|28910211|gb|CB331324.1|CB331324
EST:     GCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: GCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211466704|gb|FL410764.1|FL410764
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|71300904|gb|DR786481.1|DR786481
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211513764|gb|FL392199.1|FL392199
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211085123|gb|FL402165.1|FL402165
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|13150746|gb|BG321068.1|BG321068
EST:     TGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAAT-GTGAAGCACAACAACGTCATCCC
genomic: TGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|6918394|gb|AW399924.1|AW399924
EST:     CCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211419059|gb|FL425549.1|FL425549
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211112083|gb|FL283008.1|FL283008
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|15589508|gb|BI674124.1|BI674124
EST:     CTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|19351348|gb|BM895880.1|BM895880
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211518135|gb|FL378867.1|FL378867
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32864594|gb|CF004276.1|CF004276
EST:     CACCCCACTGGGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32912809|gb|CF017621.1|CF017621
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|26557296|gb|CA829531.1|CA829531
EST:     GCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: GCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|211314895|gb|FL369685.1|FL369685
EST:     CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|78082165|gb|DV510577.1|DV510577
EST:     CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|30704469|gb|CD058534.1|CD058534
EST:     CGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32908172|gb|CF012985.1|CF012985
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|67030644|gb|CO459393.1|CO459393
EST:     CCCCGCTCCTCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32855685|gb|CD995366.1|CD995366
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|32913278|gb|CF018090.1|CF018090
EST:     CACCCCACTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GT---AAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CACCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
EST: gi|71441294|gb|DR822344.1|DR822344
EST:     CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAG                         GTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC
genomic: CCCCGCTCCGCCTCCACTCCTCGCGCCGCTGCCGCATCTCCTCTACAGgtaagacctt ... atgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - ggagctg
- - - - - - -gcggcag
- - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - -tgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg