1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttgttatttctgaatggggtttattggttgaattttcagttcgattgctggatcacttgcttaatcgcggtgtttgttgctgtatatttccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGATCGTCCCGTGCATCGACATCAGCT
species | Zea mays |
transcript | GRMZM2G080722_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCACCCTCGTGAGGGGACTTATGAGAEST: gi|71772931|gb|DR970854.1|DR970854
genomic: GTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138214|gb|FL122277.1|FL122277
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211393122|gb|FK956090.1|FK956090
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211395750|gb|FK956107.1|FK956107
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211395748|gb|FK956105.1|FK956105
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211393118|gb|FK956086.1|FK956086
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGGGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|84980246|gb|DW530595.1|DW530595
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGGGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|32908833|gb|CF013646.1|CF013646
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|116818678|gb|EC861726.1|EC861726
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211395745|gb|FK956102.1|FK956102
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211393125|gb|FK956093.1|FK956093
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211393120|gb|FK956088.1|FK956088
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211137287|gb|FL122274.1|FL122274
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCSCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|76019176|gb|DT946346.1|DT946346
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138215|gb|FL122278.1|FL122278
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|31348993|gb|CD433350.1|CD433350
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211395746|gb|FK956103.1|FK956103
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211393121|gb|FK956089.1|FK956089
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|149076048|gb|EE164622.2|EE164622
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211395743|gb|FK956100.1|FK956100
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211393127|gb|FK956095.1|FK956095
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211393123|gb|FK956091.1|FK956091
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|149072626|gb|EE160854.2|EE160854
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138212|gb|FL122275.1|FL122275
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395741|gb|FK956098.1|FK956098
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211215605|gb|FL316840.1|FL316840
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCTTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138213|gb|FL122276.1|FL122276
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCNNCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395742|gb|FK956099.1|FK956099
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138217|gb|FL122280.1|FL122280
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395740|gb|FK956097.1|FK956097
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTATCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138218|gb|FL122281.1|FL122281
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395752|gb|FK956109.1|FK956109
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGSSCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395751|gb|FK956108.1|FK956108
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|32908771|gb|CF013584.1|CF013584
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|32908664|gb|CF013477.1|CF013477
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|149051827|gb|EE155954.2|EE155954
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGAEST: gi|211138219|gb|FL122282.1|FL122282
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211395747|gb|FK956104.1|FK956104
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTCCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACCGCCCTCATGAGGGGACTTATGAGAEST: gi|211138216|gb|FL122279.1|FL122279
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
EST: CGGCGGCGCCTSCTCCCCTCCCACTCCTACTCGTTGTCGATCTCGTCTCG GGTACCATGGCAAGATCACTCTCCACSGCCCTCATGAGGGRACTTATGAGA
genomic: CGGCGGCGCCTCCTCCCCTCCCACTCTTCCTCGTTGTCGATCTCGTCTCGgttagtttcc ... tccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGA
attgctggatcacttgcttaatcgcggtgtttgttgctgtatatttccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGATCGTCCCGTGCATCGACATCAGCT
gcttaat putative branch site (score: 4)
tttccgct putative PPT
tgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttatttctgaatggggtttattggttgaattttcagttcgattgctggatcacttgcttaatcgcggtgtttgttgctgtatatttccgctgcagGGTACCATGGCAAGATCACTCTCCACCGCCCTCGTGAGGGGACTTATGAGATCGTCCCGTGCATCGACATCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT