1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcaaacgccttcagcgtccgcgagctgtcttcaccttggaattgcttcccccgctgcttgagatgcttcatggagctgggacgtgataccttgtcctgcctggtcaagtcctggtttcaagataggtataatttcctctcccgcggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAAGTACACCAGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCC
species | Zea mays |
transcript | GRMZM2G079365_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCGCCAAGAG GATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAAEST: gi|71416543|gb|DR803743.1|DR803743
genomic: AAGCGCGCCAAGAGgtgagcaaac ... ggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAA
EST: CGCGCTCCTCGTTCCCAAGCGCGCCAAGAG GATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAAEST: gi|91056252|gb|EB166670.1|EB166670
genomic: CGCGCTCCTCGATCCCAAGCGCGCCAAGAGgtgagcaaac ... ggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAA
EST: GACGACAAGCTCGCCGAGCTCGCGCTCCTCGATCCCAAGCGCGCCAAGAG GATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAA
genomic: GACGACAAGCTCGCCGAGCTCGCGCTCCTCGATCCCAAGCGCGCCAAGAGgtgagcaaac ... ggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAA
ctggtcaagtcctggtttcaagataggtataatttcctctcccgcggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAAGTACACCAGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCC
tttcctctcccgcg CT-rich tract
tataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaaacgccttcagcgtccgcgagctgtcttcaccttggaattgcttcccccgctgcttgagatgcttcatggagctgggacgtgataccttgtcctgcctggtcaagtcctggtttcaagataggtataatttcctctcccgcggcggtgcagGATCCTGGCGAACCGGCAGTCCGCGGCGAGGTCCAAGGAGAGGAAGATCAAGTACACCAGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG