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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaataaatacacatcctgaccttaaaaaatatatatacatccttatatgtccttaagtgtagtccatgatactgtttccaaaacattcttgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTATGCAGATGATAGCAACACGCCCTTCCATCCCGGCCTACAGGCAAATACT

Basic information

species Zea mays
transcript GRMZM2G079256_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211312421|gb|FL116829.1|FL116829
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312412|gb|FL116820.1|FL116820
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211310396|gb|FL116817.1|FL116817
EST:     ACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312423|gb|FL116831.1|FL116831
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|31356068|gb|CD440425.1|CD440425
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314449|gb|FL116843.1|FL116843
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|32865280|gb|CF004962.1|CF004962
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|32863455|gb|CF003137.1|CF003137
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|21987661|gb|BQ779189.1|BQ779189
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|32907240|gb|CF012053.1|CF012053
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|78076466|gb|DV504900.1|DV504900
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312417|gb|FL116825.1|FL116825
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312416|gb|FL116824.1|FL116824
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314440|gb|FL116834.1|FL116834
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312420|gb|FL116828.1|FL116828
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|32908286|gb|CF013099.1|CF013099
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|67011703|gb|CO440452.1|CO440452
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|87156317|gb|DY401106.1|DY401106
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314439|gb|FL116833.1|FL116833
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|32911684|gb|CF016496.1|CF016496
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|71332949|gb|DR803501.1|DR803501
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314448|gb|FL116842.1|FL116842
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312419|gb|FL116827.1|FL116827
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314447|gb|FL116841.1|FL116841
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312418|gb|FL116826.1|FL116826
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314443|gb|FL116837.1|FL116837
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|22819573|gb|BU499663.1|BU499663
EST:     CCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: CCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314444|gb|FL116838.1|FL116838
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211312415|gb|FL116823.1|FL116823
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|26559923|gb|CA832158.1|CA832158
EST:     ACAATCTTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211310397|gb|FL116818.1|FL116818
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211314445|gb|FL116839.1|FL116839
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
EST: gi|211310393|gb|FL116814.1|FL116814
EST:     ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAG                         CCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA
genomic: ACAATCCTACGCTTCCGACTTCAACGCGCGCCCCTCCCATTTTCACCTAGgtaacggtcg ... tgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtccttaagtgtagtccatgatactgtttccaaaacattcttgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTATGCAGATGATAGCAACACGCCCTTCCATCCCGGCCTACAGGCAAATACT
                                       cattcttgtttttc  CT-rich tract
                                   aaaacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcaataaatacacatcctgaccttaaaaaatatatatacatccttatatgtccttaagtgtagtccatgatactgtttccaaaacattcttgtttttcagCCCTACTCCTTTGTACATAAAGGAAGATGGGAGCATATGCAACGACTGGTATGCAGATGATAGCAACACGCCCTTCCATCCCGGCCTACAGGCAAATACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
-caataaa
- - - - - - catcctg
- - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - tacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccatg