1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatttagacattagtcttttacgtcaaatgttattgttctgaacattgtatacatgtgagactcatttttgtatcattattaatttattattactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTGATATCAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
species | Zea mays |
transcript | GRMZM2G079143_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTCTCAGATGTTGEST: gi|211067536|gb|FL351660.1|FL351660
genomic: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAGgtcgctgctc ... ttactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTG
EST: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTGEST: gi|86471028|gb|DY237398.1|DY237398
genomic: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAGgtcgctgctc ... ttactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTG
EST: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTG
genomic: CCCCATCCCCGTCGAGACCGTTGATCCTGCGCCCGAGTTCGTGAAGAAAGgtcgctgctc ... ttactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTG
ttgtatacatgtgagactcatttttgtatcattattaatttattattactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTGATATCAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
tattaat putative branch site (score: 45)
agactcatttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttagacattagtcttttacgtcaaatgttattgttctgaacattgtatacatgtgagactcatttttgtatcattattaatttattattactcgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACACTTTCAGATGTTGATATCAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC