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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagcctttcatttgtggccacaccacaagcaagtacgtaacgtacacggcacacacaccgtaatgacgtgctctgctgtctgcattgcgttgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC

Basic information

species Zea mays
transcript GRMZM2G079127_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149008695|gb|EE040886.2|EE040886
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148997917|gb|EE035905.2|EE035905
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149099634|gb|EE185679.2|EE185679
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|101388055|gb|EB816042.1|EB816042
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|50323475|gb|CO518601.1|CO518601
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71445951|gb|DR827001.1|DR827001
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71433832|gb|DR814882.1|DR814882
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71330477|gb|DR802004.1|DR802004
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|91051685|gb|EB162103.1|EB162103
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148960299|gb|EE153555.2|EE153555
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71438080|gb|DR819130.1|DR819130
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148944006|gb|EC889089.2|EC889089
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|91871704|gb|EB401661.1|EB401661
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148974712|gb|EE025522.2|EE025522
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71300371|gb|DR786250.1|DR786250
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149110234|gb|EE190299.2|EE190299
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|94473310|gb|EB702268.1|EB702268
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|74244286|gb|DT652200.1|DT652200
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|89760889|gb|DY689119.1|DY689119
EST:     GCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: GCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71300941|gb|DR786499.1|DR786499
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|74236598|gb|DT644512.1|DT644512
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|89762286|gb|DY689956.1|DY689956
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71321094|gb|DR797249.1|DR797249
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149108951|gb|EE293060.2|EE293060
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149037206|gb|EE155292.2|EE155292
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|91873711|gb|EB403668.1|EB403668
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|91051348|gb|EB161766.1|EB161766
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|78115937|gb|DV534325.1|DV534325
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|86466037|gb|DY232410.1|DY232410
EST:     GCAACGGCATCCTG                         CTGGTCATGGCGAGCGCGCTGAAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: GCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148995461|gb|EE034657.2|EE034657
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148948038|gb|EC893540.2|EC893540
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|93012097|gb|EB637617.1|EB637617
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148934686|gb|EC878734.2|EC878734
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|50330891|gb|CO526017.1|CO526017
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148972875|gb|EE023877.2|EE023877
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148970949|gb|EE021756.2|EE021756
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71434914|gb|DR815964.1|DR815964
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149090223|gb|EE179525.2|EE179525
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|94472409|gb|EB701367.1|EB701367
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148954454|gb|EC899878.2|EC899878
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149108682|gb|EE292908.2|EE292908
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149023507|gb|EE045855.2|EE045855
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149096004|gb|EE181674.2|EE181674
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|76924867|gb|DV170169.1|DV170169
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|74236889|gb|DT644803.1|DT644803
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148952231|gb|EC898034.2|EC898034
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|50336253|gb|CO531379.1|CO531379
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|94479873|gb|EB708831.1|EB708831
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149008415|gb|EE040572.2|EE040572
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|50329274|gb|CO524400.1|CO524400
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148971117|gb|EE021964.2|EE021964
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|71332252|gb|DR803051.1|DR803051
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|74239734|gb|DT647648.1|DT647648
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|38688016|gb|CK145047.1|CK145047
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148964590|gb|EC901987.2|EC901987
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|149016903|gb|EE045635.2|EE045635
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148943054|gb|EC888104.2|EC888104
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|91868703|gb|EB400123.1|EB400123
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148966616|gb|EE017655.2|EE017655
EST:     GTGCTCATGACGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: GTGCTCATGA-GGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|78084439|gb|DV512832.1|DV512832
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|50330562|gb|CO525688.1|CO525688
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
EST: gi|148964758|gb|EC906016.2|EC906016
EST:     CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTG                         CTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG
genomic: CCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 40

CGTCATCAGCCAGGCCTTCATCGGCCACATCGGCGCCACGGAGCTGGCCGCCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC


Block sizes: 44 (upstream exon), 42 (downstream exon)
Score: 9

CGTCATCAGCCAGGCCTTCATCGGCCACATCGGCGCCACGGAGCTGGCCGCCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC


Block sizes: 34 (upstream exon), 49 (downstream exon)
Score: 8

CGTCATCAGCCAGGCCTTCATCGGCCACATCGGCGCCACGGAGCTGGCCGCCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 8

CGTCATCAGCCAGGCCTTCATCGGCCACATCGGCGCCACGGAGCTGGCCGCCTACGCGCTCGTCTCCACCGTGCTCATGAGGTTCAGCAACGGCATCCTGgtgagccttt ... tgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagcctttcatttgtggccacaccacaagcaagtacgtaacgtacacggcacacacaccgtaatgacgtgctctgctgtctgcattgcgttgcgttgcagCTGGGCATGGCGAGCGCGCTGGAGACGTTGTGCGGGCAGTCGTACGGCGCGAGGCAGTACCACATGCTGGGCATCTACCTGCAGCGGTCGTGGATCATCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -tttcatt
- - - - - - - - - - caccaca
- - - - - - - - - - - - - - - - - - - - - - cacggca
- - - - - - - - - - - - - - - - - - - - - - - - -cacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgca