1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaggaaatatttttccatctattcaattggctgaggcttaacttagtcagcttggacacttttcagagtctatttgtactaataaggtttcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGAATCTTTTAATGCCTACTTTGAGGATAATAGTATTGAGGAG
species | Zea mays |
transcript | GRMZM2G079083_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGGGCGAGTCCATCCTATTCTGGTTCTGCCACACTAAGG GTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGEST: gi|211387713|gb|FL060974.1|FL060974
genomic: GTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
EST: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGG GTCCATATTATTTCGAAGACTTGGTTGATATGATGTATGACAAAATTTCTGEST: gi|31406264|gb|CD484996.1|CD484996
genomic: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
EST: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGG GTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGEST: gi|78544818|gb|DV622316.1|DV622316
genomic: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
EST: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCACACTAAGG GTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGEST: gi|31351860|gb|CD436217.1|CD436217
genomic: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
EST: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGG GTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGEST: gi|20336972|gb|BQ172602.1|BQ172602
genomic: GGCCGACCAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
EST: CAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCACACTAAGG GTCCATATTATTTCGGAGACTTGGTCGATATGATGTATGGCAAAATTTCTG
genomic: CAGTTGGGCGAGTCCATCCTATTCTGGTTCTGCCGCACTAAGGgtacgtacag ... tcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTG
agtcagcttggacacttttcagagtctatttgtactaataaggtttcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGAATCTTTTAATGCCTACTTTGAGGATAATAGTATTGAGGAG
tactaat putative branch site (score: 184)
tttcattttc putative PPT
tatttgtactaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggaaatatttttccatctattcaattggctgaggcttaacttagtcagcttggacacttttcagagtctatttgtactaataaggtttcattttcagGTCCATATTATTTCGAAGACTTGGTCGATATGATGTATGACAAAATTTCTGAATCTTTTAATGCCTACTTTGAGGATAATAGTATTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - gctgagg
- - - - - - - - - - - - - - - - - - - - - - - - cagcttg