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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaattgttcctctcttcccttcgtatttagtgttcttgcttgcatttaccatcttctcacattagttaatgtcaccatgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATGAAGGCGGCATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGC

Basic information

species Zea mays
transcript GRMZM2G079031_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079031_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g41360.1 (Oryza sativa), 3'ss of exon 1
------------gtaataaattgttcctctcttcccttcgtatttagtgttcttgcttgcatttaccatcttctcacattagttaatgtcaccatgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATGAAGGCGGCATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGC
             |  ||  |   |||     ||   | |    ||       || |||   ||||||| |||| ||| | |||||||| ||  | ||||||||||||||||| || |||||| |||||||||| |||||||||||||| || || || || |||||||| |  ||||| |||| ||| |||||| |||
gtaatgatgtccattttagctgaatccctggatctaattgccgatatctactatgtttggtattaccattttcttacagttgttaatgtgac--ttcagGCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGACGAGGGAGGTATCACAATACTAACCAATTTGGCCAGGTCAATGAATCGGC

upper sequence: GRMZM2G079031_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 2
-----------gtaataa--attgttcctctcttcccttcgtatttagtgttcttgcttgcatttaccatcttctcacattagttaatgtcac-catgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATGAAGGCGGCATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGC
           || || |  ||    | |  | |   |    |||| |  ||   | |||     ||||  ||      |||     |||  |  ||| ||||||||||||||||||| |||||| |||| ||||| || || |||||||||||||| || || |  |||||    | ||| || | ||| ||||| ||| 
acaagattagtgtcattattatgaaacttgacatttttattgattttggattgaag-ttgtggaaaccaatttaatttgttaaaatctgttgcatatgtagGCTATTGCCAACTTGTCGGTGAATGCCAATGTTGCAAAAGCTGTTGCAGATGAAGGAGGAATCAATATACTTTCCAGTTTGGCTAGGTCCATGAACAGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31350103|gb|CD434460.1|CD434460
EST:     TGGACCTTGCAAGGTGCTCGGGGGAGAGCGCACAATCTGAAGCAGCAAAA                         GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAATCTGAAGCAGCAAAAgtaataaatt ... caccatgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
EST: gi|67028473|gb|CO457222.1|CO457222
EST:     TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAATCTGAAGCAGCAAAA                         GCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT
genomic: TGGACCTTGCAAGGTGCTCAAGGGAGAGCGCACAATCTGAAGCAGCAAAAgtaataaatt ... caccatgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgttcttgcttgcatttaccatcttctcacattagttaatgtcaccatgcagGCTATTGCCAACTTGTCAGTGAATACCAAGGTTGCCAAGGCAGTTGCAGATGAAGGCGGCATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGC
                                 attagttaat  TA-rich tract