Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211248101|gb|FL202300.1|FL202300EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAANCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211241406|gb|FL202265.1|FL202265EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGC
EST:
gi|211103280|gb|FL202207.1|FL202207EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32912863|gb|CF017675.1|CF017675EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|91048196|gb|EB158614.1|EB158614EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32914520|gb|CF019332.1|CF019332EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32910202|gb|CF015014.1|CF015014EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGAC
EST:
gi|211102230|gb|FL268198.1|FL268198EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211241408|gb|FL202267.1|FL202267EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG -TGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAS-AC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|37424916|gb|CF650192.1|CF650192EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211105749|gb|FL202215.1|FL202215EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211103272|gb|FL202199.1|FL202199EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|14529575|gb|BI096708.1|BI096708EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211105746|gb|FL202212.1|FL202212EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAA-CGA
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGC-A
EST:
gi|211248104|gb|FL202303.1|FL202303EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGA
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGA
EST:
gi|211243639|gb|FL202280.1|FL202280EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211243630|gb|FL202271.1|FL202271EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32908846|gb|CF013659.1|CF013659EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|149050421|gb|EE155667.2|EE155667EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211243638|gb|FL202279.1|FL202279EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211236925|gb|FL202231.1|FL202231EST: CCCAKGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGA
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGA
EST:
gi|193503170|gb|AM937582.1|AM937582EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32914057|gb|CF018869.1|CF018869EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGATCTTCGACGATGTCCAG GTGAACGATATCTCGCTGATCGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32913186|gb|CF017998.1|CF017998EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32944026|gb|CF048845.1|CF048845EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32910541|gb|CF015353.1|CF015353EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|211239156|gb|FL202242.1|FL202242EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAMS-AC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|148932144|gb|EC875571.2|EC875571EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|32916229|gb|CF021041.1|CF021041EST: CCCGGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACCACCTGGCTGTGAGTGGGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
EST:
gi|116826144|gb|EC869901.1|EC869901EST: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAG GTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
genomic: CCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCAC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
768GAAACAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCCCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCACGCGACATTCCTGCCGCACTCCGCGGGGCGCTACTCCAAGAAGCGGTTCC
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
244GAAACAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCCCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCACGCGACATTCCTGCCGCACTCCGCGGGGCGCTACTCCAAGAAGCGGTTCC
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
158GAAACAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCCCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCACGCGACATTCCTGCCGCACTCCGCGGGGCGCTACTCCAAGAAGCGGTTCC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
305GAAACAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCCCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgtacgcgaat ... aaatctacagGTGAACGATATCTCGCTGAACGACTACCTGGCTGTGACTGCGGCGAAGCACGCGACATTCCTGCCGCACTCCGCGGGGCGCTACTCCAAGAAGCGGTTCC