1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgatgcatcctcggccgcttcgattctccccaccccaaccccgatccgattcggctaggttttgttgatcatctgacgtgtggcggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGTGGCACAGGCACTGTGAAGCTGCTTAAGCACAAGGAGACCGCCAAGGTC
species | Zea mays |
transcript | GRMZM2G078933_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|23199554|gb|BU582119.1|BU582119
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270789|gb|FL137290.1|FL137290
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCA-CGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270777|gb|FL137278.1|FL137278
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270790|gb|FL137291.1|FL137291
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCAC-GGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|5268837|gb|AI770801.1|AI770801
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211524509|gb|FK953544.1|FK953544
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|29167985|gb|CB411245.1|CB411245
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270785|gb|FL137286.1|FL137286
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCA-CGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|60349763|gb|DN216736.1|DN216736
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270780|gb|FL137281.1|FL137281
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|31440969|gb|CD510400.1|CD510400
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|29544477|gb|CB604857.1|CB604857
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|30306517|gb|CD001190.1|CD001190
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|22472860|gb|BU037340.1|BU037340
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|31349368|gb|CD433725.1|CD433725
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270788|gb|FL137289.1|FL137289
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270784|gb|FL137285.1|FL137285
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|149110451|gb|EE190423.2|EE190423
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|5555559|gb|AI881510.1|AI881510
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270786|gb|FL137287.1|FL137287
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|29130800|gb|CB381504.1|CB381504
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGG-CGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|22935712|gb|BU571987.1|BU571987
genomic: GAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|31910180|gb|CD651295.1|CD651295
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGEST: gi|211270779|gb|FL137280.1|FL137280
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
EST: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACAT GAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
genomic: GAGGTCGCCGTTACCACCGGAGAGGAGGACGAGGACGTACTTGTCGACATgtgatgcatc ... ggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACG
cccgatccgattcggctaggttttgttgatcatctgacgtgtggcggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGTGGCACAGGCACTGTGAAGCTGCTTAAGCACAAGGAGACCGCCAAGGTC
atctgac putative branch site (score: 103)
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcatcctcggccgcttcgattctccccaccccaaccccgatccgattcggctaggttttgttgatcatctgacgtgtggcggttatgcagGAAGGCGAAGCTCTACCGGTTCGACAAGGAGGCGAACCAGTGGAAAGAACGTGGCACAGGCACTGTGAAGCTGCTTAAGCACAAGGAGACCGCCAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA