1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgaattctacgctgccacatctgctacaatgttagatgcagctcaaactcgtactctctcatcttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGTCAGAAATTCTGAAGGAG
species | Zea mays |
transcript | GRMZM2G078826_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|211052643|gb|FL223131.1|FL223131
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|148937722|gb|EC881924.2|EC881924
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|26558502|gb|CA830737.1|CA830737
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|67039356|gb|CO465611.1|CO465611
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|211049693|gb|FL223127.1|FL223127
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|87157670|gb|DY402459.1|DY402459
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGEST: gi|22472616|gb|BU037096.1|BU037096
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
EST: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACG GGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
genomic: ACGATCCTTCCACCGAGGCATACCGCCGCCGCCATGAGATCACCGTCACGgtatgaattc ... cttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCG
catctgctacaatgttagatgcagctcaaactcgtactctctcatcttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGTCAGAAATTCTGAAGGAG
ctctctcatcttgct CT-rich tract
aatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaattctacgctgccacatctgctacaatgttagatgcagctcaaactcgtactctctcatcttgctgcagGGGGATAATGTGCCGACTCCAATAACTTCATTTGAGGCTGGTGGCTTCCCGTCAGAAATTCTGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG