1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcggtcactcggtcatcaatctggtttgggtcttacaggtgttttttttgtttggatctgactatggggctgagtatcaaaatgcttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGATCCCGGGTGCTGAAGAGGACGAGTGCTCCTCCGCTCCGCCATCAGCGT
species | Zea mays |
transcript | GRMZM2G078725_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAG GTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGEST: gi|148947470|gb|EC892907.2|EC892907
genomic: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAGgtcggtcact ... ttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
EST: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAG GTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGEST: gi|71330967|gb|DR802298.1|DR802298
genomic: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAGgtcggtcact ... ttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
EST: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAG GTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGEST: gi|50324777|gb|CO519903.1|CO519903
genomic: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAGgtcggtcact ... ttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
EST: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAG GTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGEST: gi|88751214|gb|DY535355.1|DY535355
genomic: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAGgtcggtcact ... ttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
EST: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAG GTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
genomic: CCTACAAATCCTCTTGCGTTACCTTCTTCGAGGCCAGAAGGTTTGACAAGgtcggtcact ... ttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAG
gttttttttgtttggatctgactatggggctgagtatcaaaatgcttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGATCCCGGGTGCTGAAGAGGACGAGTGCTCCTCCGCTCCGCCATCAGCGT
atctgac putative branch site (score: 333)
tatcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcactcggtcatcaatctggtttgggtcttacaggtgttttttttgtttggatctgactatggggctgagtatcaaaatgcttcaatgcagGTCAAGATTGTGCGAGAGTCGATAAACCGGATGATTGAGGCGTGGAAGGAGATCCCGGGTGCTGAAGAGGACGAGTGCTCCTCCGCTCCGCCATCAGCGT
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