1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttgtattgtatattatttattggatagagattagccgcgaattccatgcggaggccagagcacctgtaatgattctggggcagtttttttgcgcgcagTAAAGAAGTCTACATAATTGCCAAGAATCATCTTCATCCATGGGGATCCGGTAAAGCAGCAGCCCCTTGGCTGGGTAACCTACTGTGAAGCATCAGGTCA
species | Zea mays |
transcript | GRMZM2G078663_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCGCGTCGGCTGCCGAGGCGCTGGCCTCGCCGAGGGCCCGGATGCAG TAAAGAAGTCTACATAATTGCCAAGAATCATCTTCATCCATGGGGATCCGG
genomic: GCGGCGCGTCGGCTGCCGAGGCGCTGGCCTCGCCGAGGGCCCGGATGCAGgtgctctccc ... ttgcgcgcagTAAAGAAGTCTACATAATTGCCAAGAATCATCTTCATCCATGGGGATCCGG
ccatgcggaggccagagcacctgtaatgattctggggcagtttttttgcgcgcagTAAAGAAGTCTACATAATTGCCAAGAATCATCTTCATCCATGGGGATCCGGTAAAGCAGCAGCCCCTTGGCTGGGTAACCTACTGTGAAGCATCAGGTCA
tttttttgc CT-rich tract
agttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtattgtatattatttattggatagagattagccgcgaattccatgcggaggccagagcacctgtaatgattctggggcagtttttttgcgcgcagTAAAGAAGTCTACATAATTGCCAAGAATCATCTTCATCCATGGGGATCCGGTAAAGCAGCAGCCCCTTGGCTGGGTAACCTACTGTGAAGCATCAGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -tgtattg
- - - - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg