1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tcgcttgatgctctgctttaacatttatatgtttggattttcaaatatatttaactcgtaattatctatgcttatgggtcttagttatgtgcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGGTTTGGTGCTTGCAAGAGTGCACATCAACAACTTCTGTATCTTCTGTCGT
species | Zea mays |
transcript | GRMZM2G078576_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCCTGCAGTGGCCGCGGGACCGCGTGCTGCAGGCGTGCCACGCCTTCG CCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGGEST: gi|87152463|gb|DY397252.1|DY397252
genomic: CACCCTGCAGTGGCCGCGCGACCGCGTGCTGCAGGCGTGCCACGCCTTCGgtgagtacca ... gcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGG
EST: CACCCTGCAGTGGCCGCGGGACCGCGTGGTGCAGGCGTGCCACGCCTTCG CCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGGEST: gi|87152723|gb|DY397512.1|DY397512
genomic: CACCCTGCAGTGGCCGCGCGACCGCGTGCTGCAGGCGTGCCACGCCTTCGgtgagtacca ... gcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGG
EST: CACCCTGCAGTGGCCGCGGGACCGCGTGCTGCAGGCGTGCCACGCCTTCG CCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGG
genomic: CACCCTGCAGTGGCCGCGCGACCGCGTGCTGCAGGCGTGCCACGCCTTCGgtgagtacca ... gcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGG
tatatttaactcgtaattatctatgcttatgggtcttagttatgtgcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGGTTTGGTGCTTGCAAGAGTGCACATCAACAACTTCTGTATCTTCTGTCGT
atttaac putative branch site (score: 3)
taattatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgcttgatgctctgctttaacatttatatgtttggattttcaaatatatttaactcgtaattatctatgcttatgggtcttagttatgtgcatctgcagCCGAGAATAACTACCAAACAAAGCATCTTGCAAAGATTTTGATCCATTTGGTTTGGTGCTTGCAAGAGTGCACATCAACAACTTCTGTATCTTCTGTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA