Sequence
atgc intronic sequence ATGC exonic sequencegtaagttgctctcttctttgctaacttgacgcttttaatatcagtcagatatatgctttgatataaattgcagcaccagaacatcaaatgaatagtcaaatgtgatgcttactcttttcaaatatcatgcgatgttcttttttttcattaacattttttctgccaaaatgattctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAGTTCTGACAAGGAACATAAAGGCATATTTTTGTTCCATTGTGGCAAAGAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|84980715|gb|DW531064.1|DW531064EST: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA GATGCACCAGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
genomic: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAAgtaagttgct ... attctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
EST:
gi|211398218|gb|FL061021.1|FL061021EST: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA GATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
genomic: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAAgtaagttgct ... attctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
EST:
gi|211145552|gb|FL475586.1|FL475586EST: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA GATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
genomic: CCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAAgtaagttgct ... attctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgcgatgttcttttttttcattaacattttttctgccaaaatgattctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAGTTCTGACAAGGAACATAAAGGCATATTTTTGTTCCATTGTGGCAAAGAG
cattaac putative branch site (score: 2)
ttctccc putative PPT
atgttcttttttttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttgctctcttctttgctaacttgacgcttttaatatcagtcagatatatgctttgatataaattgcagcaccagaacatcaaatgaatagtcaaatgtgatgcttactcttttcaaatatcatgcgatgttcttttttttcattaacattttttctgccaaaatgattctcccagGATGCACCGGCCGGTGAACAAAAGGTTTAGGAAGAATGGTCCGAACCAGAGTTCTGACAAGGAACATAAAGGCATATTTTTGTTCCATTGTGGCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG