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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacattccttgcgacttcgcgacagcagtgagcatctttcttttgatacagttatagaaaatctttactagtgcactgatgatattctgatgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC

Basic information

species Zea mays
transcript GRMZM2G078508_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518502|gb|FL164996.1|FL164996
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
EST: gi|211516147|gb|FL164991.1|FL164991
EST:     CGCGGCCGCTGCMTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
EST: gi|211516137|gb|FL164981.1|FL164981
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGANCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
EST: gi|211513792|gb|FL164975.1|FL164975
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
EST: gi|211513791|gb|FL164974.1|FL164974
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
EST: gi|211518499|gb|FL164993.1|FL164993
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacagttatagaaaatctttactagtgcactgatgatattctgatgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC
                                        ttctgat  putative branch site (score: 3)
       ttatagaaaatcttta  TA-rich tract