1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttataccacctcaatccactccaatccaaaattacacaaacaagccctaaagtgattgctaatctcactcacactattcattctggtttctcgcatcagATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAATCTAATAAGCAGTGTGTTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
species | Zea mays |
transcript | GRMZM2G077960_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGCGGCGGCGAGAATGCCGGCGACGACGACACCATTTCCGTATTTGCG ATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAATEST: gi|148936057|gb|EC880118.2|EC880118
genomic: GTGGCGGCGGCGAGAATGCCGGCGACGACGACACCATTTCCGTATTTGCGgtaatgattc ... ctcgcatcagATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAAT
EST: GTGGCGGCGGCGAGAATGCCGGCGACGACGACACCATTTCCGTATTTGCG ATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAAT
genomic: GTGGCGGCGGCGAGAATGCCGGCGACGACGACACCATTTCCGTATTTGCGgtaatgattc ... ctcgcatcagATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAAT
ccctaaagtgattgctaatctcactcacactattcattctggtttctcgcatcagATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAATCTAATAAGCAGTGTGTTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
cactcac putative branch site (score: 34)
tttctcgc putative PPT
tattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttataccacctcaatccactccaatccaaaattacacaaacaagccctaaagtgattgctaatctcactcacactattcattctggtttctcgcatcagATTTTTGACGGACACAATGGCTCTGCAGCTGCCATATACACCCGGGAGAATCTAATAAGCAGTGTGTTGGCTGCTATTCCTCCAAATCTCACAAGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - taccacc
- - - - - - - - ccactcc
- - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - -caagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg