1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agtgcttattagattttcatactgatgagtgcgcatggttttagctctagttttttcttttacgctcaaactaggatgatattcgatgactgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGAATTGGCAAAACCCTGGGAATTGGGTCGTTCGGTAAAGTGAAGATCGCG
species | Zea mays |
transcript | GRMZM2G077278_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|149109232|gb|EE190089.2|EE190089
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|71327271|gb|DR800259.1|DR800259
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|74240534|gb|DT648448.1|DT648448
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|149013919|gb|EE043417.2|EE043417
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|211110233|gb|FL282966.1|FL282966
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|211085855|gb|FL313546.1|FL313546
genomic: GCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCCGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|148954916|gb|EC900404.2|EC900404
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|78108756|gb|DV527173.1|DV527173
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|9255242|gb|BE345710.1|BE345710
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|9255371|gb|BE345839.1|BE345839
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|71316811|gb|DR795093.1|DR795093
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: CCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|76012620|gb|DT939790.1|DT939790
genomic: CCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGEST: gi|31352455|gb|CD436812.1|CD436812
genomic: GCCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: CGGCGGGCGGGACCCAGGTCGCAGCGTCTCCCCTGCCTCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCAAACCCTTTGAGCGGTTACAGEST: gi|211104121|gb|FL354108.1|FL354108
genomic: CGGCGGGCGGGACCCAGCTCGCAGCGTCTCCCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
EST: CCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTCSCCCTGCGGCGAG GTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
genomic: CCTGCTCCGGCGGGCGGGACCCAGCTCGCAGCGTCTC-CCCTGCGGCGAGgtacgccttc ... tgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAG
tctagttttttcttttacgctcaaactaggatgatattcgatgactgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGAATTGGCAAAACCCTGGGAATTGGGTCGTTCGGTAAAGTGAAGATCGCG
ttttttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcttattagattttcatactgatgagtgcgcatggttttagctctagttttttcttttacgctcaaactaggatgatattcgatgactgtgattcagGTACACGATGGAGGGAGCGGGAAGAGATGCCAACCCTTTGAGCGGTTACAGAATTGGCAAAACCCTGGGAATTGGGTCGTTCGGTAAAGTGAAGATCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-gtgctta
- - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - gcgcatg