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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcctgtttcctgaaaaaaaagcacgactgaactagatgttattaggtccgcacatgaattgcatacgaaatgttttcctgactggggctaaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA

Basic information

species Zea mays
transcript GRMZM2G077233_T05
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211065424|gb|FL270388.1|FL270388
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|32848977|gb|CD988658.1|CD988658
EST:     CTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211006260|gb|FL408530.1|FL408530
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211504863|gb|FL422036.1|FL422036
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211010988|gb|FL371775.1|FL371775
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211284111|gb|FL384410.1|FL384410
EST:     CCAGCTTTCCCCTTCTCTCCGGTCHGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|76291015|gb|DV030583.1|DV030583
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211307069|gb|FL384798.1|FL384798
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211092306|gb|FL381164.1|FL381164
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211063112|gb|FL397366.1|FL397366
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068181|gb|FL270394.1|FL270394
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068184|gb|FL270397.1|FL270397
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         GTAAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211358134|gb|FL398765.1|FL398765
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAKACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211408348|gb|FL400112.1|FL400112
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211021985|gb|FL373963.1|FL373963
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211169684|gb|FL404316.1|FL404316
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068180|gb|FL270393.1|FL270393
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         GTAAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068178|gb|FL270391.1|FL270391
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAAGGCAGAAG                         TTTAGCCATGGTGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211373714|gb|FL377783.1|FL377783
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|76289740|gb|DV029308.1|DV029308
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|60357617|gb|DN224590.1|DN224590
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211282292|gb|FL384388.1|FL384388
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211501660|gb|FL380192.1|FL380192
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068183|gb|FL270396.1|FL270396
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068182|gb|FL270395.1|FL270395
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211490935|gb|FL402015.1|FL402015
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211276938|gb|FL386932.1|FL386932
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|101393193|gb|EB818527.1|EB818527
EST:     CGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211448105|gb|FL406311.1|FL406311
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211065421|gb|FL270385.1|FL270385
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|33095426|gb|CF055420.1|CF055420
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211035298|gb|FL425640.1|FL425640
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTNTTATCTGGGTCC
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTT-TCTGGGTCC
EST: gi|211469234|gb|FL410782.1|FL410782
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211256572|gb|FL391902.1|FL391902
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211065420|gb|FL270384.1|FL270384
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211526836|gb|FL377024.1|FL377024
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068177|gb|FL270390.1|FL270390
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|91876413|gb|EB406370.1|EB406370
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A-                         ---AGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211065425|gb|FL270389.1|FL270389
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211068179|gb|FL270392.1|FL270392
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         TTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
EST: gi|211065423|gb|FL270387.1|FL270387
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         GTAAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 385

GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 478

GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 385

GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 611

GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... aaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtccgcacatgaattgcatacgaaatgttttcctgactggggctaaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA
                       aaatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctcctgtttcctgaaaaaaaagcacgactgaactagatgttattaggtccgcacatgaattgcatacgaaatgttttcctgactggggctaaattgctagTTTAGCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAACATGCTCCTTGCTACTTGATGCTTCCTCCGATGGACTGTTAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- -ctgtttc
- - - - - - -aaaaaaa
- - - - - - - - - - -gcacgac
- - - - - - - - - - - - - - - - - - - - - - - - - -cacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggggc