1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcatacaattagaagaaactacatgattttggacatttttcatgactgtagaatatattctgtgctgttgtgctaatgccagtgtttctattttgtgcagCTCTAGTGGACCATCGCAAACAG
species | Zea mays |
transcript | GRMZM2G076276_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCTCGCTTTCCTCATCCTCGCCGCCTCCCCCTGCCTCCAAGTCCAAG CTCTAGTGGACCATCGCAAACAGEST: gi|31351063|gb|CD435420.1|CD435420
genomic: CGCTCTCGCTTTCCTCATCCTCGCCGCCTCCCCCTGCCTCCAAGTCCAAGgtaatgccgg ... ttttgtgcagCTCTAGTGGACCATCGCAAACAG
EST: CGCTCTCGCTTTCCTCATCCTCGCCGCCTCCCCCTGCCTCCAAGTCCAAG CTCTAGTGGACCATCGCAAACAG
genomic: CGCTCTCGCTTTCCTCATCCTCGCCGCCTCCCCCTGCCTCCAAGTCCAAGgtaatgccgg ... ttttgtgcagCTCTAGTGGACCATCGCAAACAG
ctgtagaatatattctgtgctgttgtgctaatgccagtgtttctattttgtgcagCTCTAGTGGACCATCGCAAACAG
tgctaat putative branch site (score: 2)
tttctatttt putative PPT
aatatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatacaattagaagaaactacatgattttggacatttttcatgactgtagaatatattctgtgctgttgtgctaatgccagtgtttctattttgtgcagCTCTAGTGGACCATCGCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA