Sequence
atgc intronic sequence ATGC exonic sequencegtagataaatgatatcccaaatgcactcaacagtaggaatcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G076049_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g50040.1 (Oryza sativa), 3'ss of exon 3
--------gtagataaatgatatccca-aatgcactcaacagtaggaatcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactc-agGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
||| | || | | || |||| ||| | | | ||| | || || | || | | ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||
cctgagttctagccttctaggggccagtactacaaacaactgtacta--ccagtaggagtattactg-tactgcttacgttaattaatcttgcgttactccagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCGTTCCGTGTCAACGCCGACAACTTCATGTGCAGCCTCCTCCCGGGCATCTCTAATCACCCCCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211064339|gb|FL102306.1|FL102306EST: AGAGTAGCAGCAGGGGTTCCCAGCGAAGAAGCCTTCTTCACGGGTGTACT GAGGTTCTGATGGGAAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
genomic: AGAGTAGCAGCAGGGGTTCCCAGCGAAGAAGCCTTCTTCACGGGTGTACTgtagataaat ... tgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
aaatctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagataaatgatatcccaaatgcactcaacagtaggaatcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC