1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtattattttgagttaatttatgtaatttttggcttgttgtacagtaatgctggttagtctattcaggtttgctcaaagttgttttctctggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAACTGTGAGACTCCAACTCTG
species | Zea mays |
transcript | GRMZM2G075719_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAG GCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAEST: gi|211109340|gb|FL282963.1|FL282963
genomic: TCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAGgtacgacggc ... tggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGA
EST: CCAGCATCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAG GCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAEST: gi|116822600|gb|EC866010.1|EC866010
genomic: CCAGCATCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAGgtacgacggc ... tggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGA
EST: CCAGCATCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAG GCTACAGTTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGA
genomic: CCAGCATCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAGgtacgacggc ... tggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGA
gtaatgctggttagtctattcaggtttgctcaaagttgttttctctggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAACTGTGAGACTCCAACTCTG
ttgttttctct CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtattattttgagttaatttatgtaatttttggcttgttgtacagtaatgctggttagtctattcaggtttgctcaaagttgttttctctggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAACTGTGAGACTCCAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA