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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaggatatctgaatctcaagttttctgtgagggagtggttctgtgttatcctaagattgttgctgtattgttactgactgtttcacttctatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGTGGATTTGATACTAGCTCTGAACAGCCAGTAGAATTTCTCAAATACTGTC

Basic information

species Zea mays
transcript GRMZM2G075562_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76293630|gb|DV033198.1|DV033198
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|71424139|gb|DR806251.1|DR806251
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|78083947|gb|DV512340.1|DV512340
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|71435278|gb|DR816328.1|DR816328
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|78083774|gb|DV512167.1|DV512167
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|76294406|gb|DV033974.1|DV033974
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|148965917|gb|EE016823.2|EE016823
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|148947848|gb|EC893338.2|EC893338
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|74238806|gb|DT646720.1|DT646720
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
EST: gi|149101515|gb|EE187636.2|EE187636
EST:     GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACG                         TATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT
genomic: GGCCGCGCGGGTTGGATCCGAGCTCCGTGCAGCAGCTCCGCCGCGATACGgtgagcgctc ... tatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatcctaagattgttgctgtattgttactgactgtttcacttctatatgccagTATCGCATAGGATTCCACTGGATTCAGCTGCTGAGCAGGGTACTGGAAGGTGGATTTGATACTAGCTCTGAACAGCCAGTAGAATTTCTCAAATACTGTC
                           tactgac  putative branch site (score: 1)
                                    tttcacttct  putative PPT
                     tattgtta  TA-rich tract