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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgacccttatcatattgggagagctagaaccactacgtgctttagtgcttctgtagttattaaaaatatcaatgaccctcatgtttgaactgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGCCTGGATTTGAGAGTCCCCGTCCCACGGAAGCAGGTGGGTGGTTAAAGAA

Basic information

species Zea mays
transcript GRMZM2G075488_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430371|gb|DR811421.1|DR811421
EST:     TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCG                         CTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
genomic: TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCGgtaggtcgcg ... actgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
EST: gi|148934529|gb|EC878571.2|EC878571
EST:     TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCG                         CTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
genomic: TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCGgtaggtcgcg ... actgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
EST: gi|149107818|gb|EE292179.2|EE292179
EST:     TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCG                         CTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
genomic: TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCGgtaggtcgcg ... actgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
EST: gi|149075976|gb|EE164545.2|EE164545
EST:     TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCG                         CTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
genomic: TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCGgtaggtcgcg ... actgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
EST: gi|148995979|gb|EE035228.2|EE035228
EST:     TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCG                         CTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC
genomic: TCCCGAGCGCGGGGACACCATCACCGTCTTCGCGCGCGAGGTCGTCGCCGgtaggtcgcg ... actgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcttctgtagttattaaaaatatcaatgaccctcatgtttgaactgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGCCTGGATTTGAGAGTCCCCGTCCCACGGAAGCAGGTGGGTGGTTAAAGAA
                                              ctgtttc  CT-rich tract
        tgtagttattaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgacccttatcatattgggagagctagaaccactacgtgctttagtgcttctgtagttattaaaaatatcaatgaccctcatgtttgaactgtttcagCTGGGAAAGAATACATATCTCTGCCTTATTTATTGTACCTACAAGGAGGGCCTGGATTTGAGAGTCCCCGTCCCACGGAAGCAGGTGGGTGGTTAAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA