1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcgagattcgtgccgagacgatgcctgtccttcgcattcgaactgtgtgttgatacatgctgaaactgtgggagtgtctggctgctgatgaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGTGCCTGCTGCCGCTGTTCCACATCTACTCGCTGAACTCGGTGCTGCTGG
species | Zea mays |
transcript | GRMZM2G075333_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAATCCGAACCTGTACTTCEST: gi|91872377|gb|EB402334.1|EB402334
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTC
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGGACCCGAACCTGTACTTCCGEST: gi|148960512|gb|EE011113.2|EE011113
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCG
EST: AGGGCGTCATGCTCACCCACCGCACCCTCATCACCAGCGTCGCGCAGCAG GGTGATGGCGAAAACCCGAACCTGTACTTCEST: gi|148944630|gb|EC889762.2|EC889762
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTC
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACTTCEST: gi|74244018|gb|DT651932.1|DT651932
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTC
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACTTCGGCAAGGACGACGTGGTGCTGEST: gi|76010779|gb|DT937949.1|DT937949
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTG
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGTTGCTGEST: gi|149100103|gb|EE186157.2|EE186157
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTG
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GGTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGEST: gi|148970851|gb|EE021627.2|EE021627
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTG
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACEST: gi|148969576|gb|EE020410.2|EE020410
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTAC
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGEST: gi|71450118|gb|DR831168.1|DR831168
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTG
EST: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGAACCCGAACCTGTACTTCCGCA-GGACGACGTGGTGCTGEST: gi|76287909|gb|DV027477.1|DV027477
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTG
EST: GGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAG GTTGATGGCGAGACCCCGA-CCTGTACTTCCGCAAGG
genomic: AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGgtacgtaccg ... gaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGG
gtgtgttgatacatgctgaaactgtgggagtgtctggctgctgatgaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGTGCCTGCTGCCGCTGTTCCACATCTACTCGCTGAACTCGGTGCTGCTGG
tgctgat putative branch site (score: 413)
atgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgagattcgtgccgagacgatgcctgtccttcgcattcgaactgtgtgttgatacatgctgaaactgtgggagtgtctggctgctgatgaatatgaagGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGTGCCTGCTGCCGCTGTTCCACATCTACTCGCTGAACTCGGTGCTGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -cgtgccg
- - - - - - - - - - - tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg