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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagctcagcaccaaggcacgacgcaactgcagcaacatcggcgtcgcgcagatcgtcgccgccgcgtggtccgactgcctcgctgctcgcccccaatcagGCGGCGGCGGATGTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCG

Basic information

species Zea mays
transcript GRMZM2G075153_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075153_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g25940.4 (Oryza sativa), 3'ss of exon 1
cagctcagcaccaaggcacgacgcaactgcagcaacatcggcgtcgcgcagatcgtcgccgccgcgtggtccgactgcctcgctgctcgcccccaatcagGCGGCGGCGGATGTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCG
                                                                                                  ||||  |||| || ||  |||| || || ||||| ||| | |  ||||||||||||| || |||||||||||    ||||||||| || |||||||||||||
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggagGCCACGGCCGAGGTTGGCGCCATCCCCAACGCCAAGCTCGGCCAGCCGTCCGCCGCCGCATTGGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229609|gb|CF919922.1|CF919922
EST:     CTCCACCTCCTCGAAGCCGCCGCGACCGATCGAGCGAAGCGTCCCTTCCC                         GCGGCGGCGGATGTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCC
genomic: CTCCACCTCCTCGAAGCCGCCGCGACCGAACGAGCGAAGCGTCCCTTCCCgcgccgacgc ... ccccaatcagGCGGCGGCGGATGTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcagatcgtcgccgccgcgtggtccgactgcctcgctgctcgcccccaatcagGCGGCGGCGGATGTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCG
                                        ctcgccccc  CT-rich tract